Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11875 | Soybean | endoplasmic reticulum | 93.56 | 90.76 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 61.37 | 62.01 |
| CDX74101 | Canola | cytosol | 42.83 | 56.96 |
| CDY08048 | Canola | nucleus | 42.49 | 56.25 |
| KRG93254 | Soybean | endoplasmic reticulum | 36.82 | 55.28 |
| AT3G06480.1 | Thale cress | cytosol | 51.5 | 55.15 |
| KRH56577 | Soybean | nucleus | 36.65 | 55.1 |
| Bra001200.1-P | Field mustard | cytosol | 49.1 | 54.37 |
| Solyc01g057760.2.1 | Tomato | nucleus | 54.33 | 51.84 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 43.78 | 48.3 |
| KRH44155 | Soybean | cytosol | 20.77 | 47.73 |
| KRH47127 | Soybean | nucleus | 20.69 | 47.53 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 50.47 | 44.41 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 50.64 | 44.23 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 17.94 | 43.91 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 50.47 | 43.65 |
| KRH03228 | Soybean | nucleus | 22.49 | 43.52 |
| OQU84042 | Sorghum | cytosol | 51.42 | 43.16 |
| Zm00001d048632_P001 | Maize | cytosol | 50.3 | 42.4 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 50.21 | 42.33 |
| KRH57127 | Soybean | endoplasmic reticulum, nucleus | 22.23 | 42.32 |
| Zm00001d007719_P010 | Maize | cytosol | 49.1 | 42.28 |
| KRH58901 | Soybean | nucleus | 19.31 | 36.65 |
| KRH42811 | Soybean | endoplasmic reticulum | 19.31 | 36.35 |
| KRH38030 | Soybean | endoplasmic reticulum | 18.88 | 36.01 |
| KRG97325 | Soybean | endoplasmic reticulum | 18.03 | 35.53 |
| KRH71800 | Soybean | plastid | 18.54 | 35.35 |
| KRH74291 | Soybean | nucleus | 16.05 | 34.82 |
| KRH31589 | Soybean | nucleus | 17.94 | 34.6 |
| KRH39630 | Soybean | nucleus | 15.79 | 34.26 |
| KRH20283 | Soybean | plastid | 16.91 | 33.62 |
| KRH03709 | Soybean | plastid | 17.17 | 32.79 |
| KRG98124 | Soybean | endoplasmic reticulum | 14.51 | 29.6 |
| KRH30661 | Soybean | endoplasmic reticulum | 14.33 | 29.56 |
| KRG94409 | Soybean | cytosol | 14.76 | 29.25 |
| KRH68534 | Soybean | cytosol | 14.68 | 29.13 |
| KRG96540 | Soybean | cytosol, mitochondrion | 17.68 | 26.82 |
| KRH68277 | Soybean | nucleus | 17.68 | 26.34 |
| KRH51212 | Soybean | nucleus | 15.02 | 24.96 |
| KRH01937 | Soybean | nucleus | 14.68 | 24.22 |
| KRH77709 | Soybean | nucleus | 17.34 | 18.3 |
| KRH27757 | Soybean | nucleus | 17.08 | 17.98 |
Protein Annotations
| EntrezGene:100807830 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:ACUP02005400 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| EnsemblPlantsGene:GLYMA_09G031100 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:K7LBJ6 | EnsemblPlants:KRH36905 | ProteinID:KRH36905 |
| ProteinID:KRH36905.1 | ProteinID:KRH36906.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00397 |
| ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI0002963DB7 | InterPro:WW_dom | InterPro:WW_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:2556067..2563182
Molecular Weight (calculated)
127098.0 Da
IEP (calculated)
10.369
GRAVY (calculated)
-0.801
Length
1165 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATAEAASTG LGPRYAPDDP TLPQPWKGLI DGSTGLLYYW NPETNVTQYE KPTPPVPAPV ASAPSLAPIP AAHTMQPGGM MQQHGQQMLQ VQSSQQHLAQ
0101: QHGQSMLPQQ QQQQQSPHIA HVTQQQSSQG AQAAQQQNHH GQQMMQQPQG HQARQPMMQP QGQQMHHQMP PQAIHSQHFG QGMPQDQGSH IVQPQAHQFT
0201: SQNMHYMSYQ QNVITSRQPN SQHIQPNMVS PGQPNSQQVQ HNMHGQPFEN QQTTYPKVEV AEFKNGSQVG HSLSHYPQRS ALPVQNNQNN PAEVGSGQVP
0301: NVGVNAGQPQ QFRALSGSMQ QSPSGSDLYY QHGPNFHSQM SPGMMHGHPS NVHPAGQKMG HEDNLHGRAG NEYDYNSTKD MSTMGCQQPD ITPIPIPRNQ
0401: QDMRIGNAPF QNVMPSGNGS GIAGNAVPSM FVPPIGGPSP LSTNPSMRPP YMGSSDATDL SPAEIYCQQH EVTATGDNIP PPFMTFDATG FPPEILREIY
0501: SAGFSSPTPI QAQTWPVALQ GRDIVAIAKT GSGKTLGYLM PAFILLRQRR NNSLNGPTVL VLAPTRELAT QIQDEVIKFG RSSRVSCTCL YGGAPKALQL
0601: KELDRGADIV VATPGRLNDI LEMKKIDFGQ VSLLVLDEAD RMLDMGFEPQ IRKIVNEIPP RRQTLMYTAT WPKEVRKIAS DLLVNPVQVN IGNVDELAAN
0701: KAITQYVEVV PQMEKQRRLE QILRSQERGS KVIIFCSTKR LCDQLARSIG RTFGAAAIHG DKSQGERDWV LGQFRTGKSP ILVATDVAAR GLDIKDIRVV
0801: INYDFPTGIE DYVHRIGRTG RAGATGVSYT FFSEQDWKHA GDLIKVLEGA NQHVLPELRQ MALRGPSNFG KDRGGMSRFD SGGGGGGRWD TGGRGGFGGR
0901: GGGMRDGSFG GRGSGFGGRG GGIRDGGFGG RGGGFGGRGG MRDGGSGQGG RGDFFPGRGN RGRGSGGPRG GHVGWGRGER GMDDRYNMEG RGQGRGRGRF
1001: DNRRDVSSKG RGRSHSRSPE RVRTWDYSKS SSRSRSRSRS RSWSRGRSRS RSWSRGRSRS YSRSISPRRS RSRSRGRSYS RSRSRSPSYD RRDRSDQQLP
1101: DQKDIRAHEV GTSDPRMLPV SSGLGTQGNS FLGTEQVEQQ PIVSSTDPGN PEAVADLSHQ SVSDI
0101: QHGQSMLPQQ QQQQQSPHIA HVTQQQSSQG AQAAQQQNHH GQQMMQQPQG HQARQPMMQP QGQQMHHQMP PQAIHSQHFG QGMPQDQGSH IVQPQAHQFT
0201: SQNMHYMSYQ QNVITSRQPN SQHIQPNMVS PGQPNSQQVQ HNMHGQPFEN QQTTYPKVEV AEFKNGSQVG HSLSHYPQRS ALPVQNNQNN PAEVGSGQVP
0301: NVGVNAGQPQ QFRALSGSMQ QSPSGSDLYY QHGPNFHSQM SPGMMHGHPS NVHPAGQKMG HEDNLHGRAG NEYDYNSTKD MSTMGCQQPD ITPIPIPRNQ
0401: QDMRIGNAPF QNVMPSGNGS GIAGNAVPSM FVPPIGGPSP LSTNPSMRPP YMGSSDATDL SPAEIYCQQH EVTATGDNIP PPFMTFDATG FPPEILREIY
0501: SAGFSSPTPI QAQTWPVALQ GRDIVAIAKT GSGKTLGYLM PAFILLRQRR NNSLNGPTVL VLAPTRELAT QIQDEVIKFG RSSRVSCTCL YGGAPKALQL
0601: KELDRGADIV VATPGRLNDI LEMKKIDFGQ VSLLVLDEAD RMLDMGFEPQ IRKIVNEIPP RRQTLMYTAT WPKEVRKIAS DLLVNPVQVN IGNVDELAAN
0701: KAITQYVEVV PQMEKQRRLE QILRSQERGS KVIIFCSTKR LCDQLARSIG RTFGAAAIHG DKSQGERDWV LGQFRTGKSP ILVATDVAAR GLDIKDIRVV
0801: INYDFPTGIE DYVHRIGRTG RAGATGVSYT FFSEQDWKHA GDLIKVLEGA NQHVLPELRQ MALRGPSNFG KDRGGMSRFD SGGGGGGRWD TGGRGGFGGR
0901: GGGMRDGSFG GRGSGFGGRG GGIRDGGFGG RGGGFGGRGG MRDGGSGQGG RGDFFPGRGN RGRGSGGPRG GHVGWGRGER GMDDRYNMEG RGQGRGRGRF
1001: DNRRDVSSKG RGRSHSRSPE RVRTWDYSKS SSRSRSRSRS RSWSRGRSRS RSWSRGRSRS YSRSISPRRS RSRSRGRSYS RSRSRSPSYD RRDRSDQQLP
1101: DQKDIRAHEV GTSDPRMLPV SSGLGTQGNS FLGTEQVEQQ PIVSSTDPGN PEAVADLSHQ SVSDI
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.