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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01937 Soybean nucleus 97.29 96.6
GSMUA_Achr3P01410_001 Banana nucleus 64.34 85.58
VIT_03s0038g00010.t01 Wine grape cytosol 86.73 85.39
VIT_09s0054g01810.t01 Wine grape cytosol 85.59 84.63
CDX84672 Canola cytosol 53.21 83.45
PGSC0003DMT400043101 Potato nucleus 83.74 83.03
Solyc02g081290.2.1 Tomato nucleus 76.75 82.39
CDY53786 Canola nucleus 68.76 81.69
Bra021872.1-P Field mustard nucleus 76.46 81.34
AT2G33730.1 Thale cress nucleus 83.17 79.54
CDY37696 Canola nucleus 65.34 77.63
PGSC0003DMT400024330 Potato cytosol 73.61 77.13
Solyc02g068190.1.1 Tomato cytosol, nucleus 72.61 76.89
CDX79541 Canola nucleus 68.62 76.47
TraesCS4A01G270200.1 Wheat nucleus 78.6 75.79
Zm00001d033704_P007 Maize extracellular 79.74 75.75
TraesCS4B01G043900.1 Wheat nucleus 78.6 75.58
Zm00001d013453_P001 Maize nucleus 78.46 74.93
Os03t0708600-02 Rice nucleus 77.32 73.64
HORVU6Hr1G080730.2 Barley cytosol 33.67 72.17
HORVU4Hr1G007110.17 Barley mitochondrion 78.89 71.82
KXG37746 Sorghum nucleus 79.89 69.31
TraesCS6B01G364400.1 Wheat nucleus, plastid 64.05 69.18
TraesCS6B01G364300.1 Wheat nucleus, plastid 63.91 69.03
TraesCS4D01G041400.1 Wheat nucleus 78.74 68.91
TraesCS5B01G079300.1 Wheat nucleus 70.19 68.43
TraesCS1B01G445500.1 Wheat cytosol 44.08 67.61
HORVU3Hr1G031710.1 Barley mitochondrion 24.68 66.28
HORVU1Hr1G083090.1 Barley cytosol 23.4 65.34
TraesCS1A01G415500.1 Wheat cytosol 59.63 64.91
HORVU1Hr1G091050.3 Barley nucleus 53.92 63.21
OQU83862 Sorghum nucleus 57.49 62.77
HORVU5Hr1G044620.1 Barley cytosol, mitochondrion 29.67 54.74
KRH47127 Soybean nucleus 25.11 34.71
KRH44155 Soybean cytosol 24.96 34.52
KRH48684 Soybean cytosol, endoplasmic reticulum 22.54 33.19
KRH74291 Soybean nucleus 24.68 32.22
KRH39630 Soybean nucleus 24.54 32.03
KRG97325 Soybean endoplasmic reticulum 26.68 31.64
KRH42811 Soybean endoplasmic reticulum 27.67 31.34
KRH58901 Soybean nucleus 27.39 31.27
KRH30661 Soybean endoplasmic reticulum 25.11 31.15
KRG98124 Soybean endoplasmic reticulum 25.25 31.0
KRH38030 Soybean endoplasmic reticulum 26.82 30.77
KRH31589 Soybean nucleus 26.39 30.63
KRH71800 Soybean plastid 26.68 30.61
KRG94409 Soybean cytosol 25.39 30.27
KRH68534 Soybean cytosol 25.25 30.15
KRH20283 Soybean plastid 24.68 29.52
KRH57127 Soybean endoplasmic reticulum, nucleus 25.11 28.76
KRH03228 Soybean nucleus 24.68 28.74
KRH03709 Soybean plastid 24.25 27.87
KRG96540 Soybean cytosol, mitochondrion 27.53 25.13
KRH68277 Soybean nucleus 27.82 24.94
KRH56577 Soybean nucleus 27.1 24.52
KRG93254 Soybean endoplasmic reticulum 26.96 24.36
KRH27757 Soybean nucleus 31.24 19.78
KRH77709 Soybean nucleus 30.67 19.47
KRH36905 Soybean nucleus 24.96 15.02
KRH11875 Soybean endoplasmic reticulum 25.39 14.82
Protein Annotations
EntrezGene:100799264MapMan:16.4.7.1.3Gene3D:3.40.50.300EMBL:ACUP02004730ncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_07G268900GO:GO:0000166GO:GO:0000375GO:GO:0003674GO:GO:0003676GO:GO:0003824
GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005682GO:GO:0005730GO:GO:0005737GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0010501GO:GO:0016787GO:GO:0071013
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014UniProt:K7L406
EnsemblPlants:KRH51212ProteinID:KRH51212ProteinID:KRH51212.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271
ScanProsite:PS00039PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF25
InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI0002339205
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr7:+:44200800..44203387
Molecular Weight (calculated)
81440.6 Da
IEP (calculated)
9.103
GRAVY (calculated)
-0.959
Length
701 amino acids
Sequence
(BLAST)
001: MKRSNDDVAA PVSTAKPVFL TKAQREQLAL QRRHEDVADQ KRRQEQLLSR NHSSDRDRDR ERDRDHRDRD RDRDRDRDRD RERERERARD RDREAERRNR
101: EREREEETRS RERARLEKLV EREREKELES IKEQYLGSKK PKKRVIKPSE KFRFSFDWEN TEDTSRDMNS LYQNPHEAQL LFGRGFRAGM DRREQKKLAA
201: KNEKDMRDQI RKKDGIEEKP EEADAQRRKE AAADLYDTFD MRVDRHWSEK KLEEMTERDW RIFREDYNIS YKGSKIPRPM RSWNESKLTS ELLKAVEKAG
301: YKTPSPIQMA AIPLGLQQRD VIGIAETGSG KTAAFVLPML SYITRLPPIS EDNEAEGPYA VVMAPTRELA QQIEDETVKF AQYLGIKVVS IVGGQSIEEQ
401: GFKIRQGCEI VIATPGRLID CLERRYAVLN QCNYVVLDEA DRMIDMGFEP QVMGVLDAMP SSNLKPENED EELDEKKIYR TTYMFSATMP PAVERLARKY
501: LRNPVVVTIG TAGKATDLIS QHVIMMKEAE KFYKLQRLLD ELNDKTAIVF VNTKRNADHV AKSLDKEGYR VTTLHGGKSQ EQREISLEGF RTKRYNVLVA
601: TDVAGRGIDI PDVAHVINYD MPGNIEMYTH RIGRTGRAGK TGVATTFLTL QDSDVFYDLK QMLIQSNSPV PPELARHEAS KFKPGTIPDR PPRRNDTVFA
701: H
Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Arabidopsis Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.