Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37696 | Canola | nucleus | 90.0 | 90.0 |
| CDX84672 | Canola | cytosol | 66.27 | 87.47 |
| Bra021872.1-P | Field mustard | nucleus | 97.12 | 86.95 |
| CDX79541 | Canola | nucleus | 81.19 | 76.15 |
| AT2G33730.1 | Thale cress | nucleus | 94.41 | 75.99 |
| KRH51212 | Soybean | nucleus | 81.69 | 68.76 |
| KRH01937 | Soybean | nucleus | 82.2 | 68.7 |
| VIT_03s0038g00010.t01 | Wine grape | cytosol | 81.19 | 67.28 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 60.0 | 67.17 |
| VIT_09s0054g01810.t01 | Wine grape | cytosol | 80.51 | 67.0 |
| PGSC0003DMT400043101 | Potato | nucleus | 79.32 | 66.2 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 50.85 | 65.65 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 27.63 | 64.94 |
| Solyc02g081290.2.1 | Tomato | nucleus | 70.51 | 63.71 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 27.97 | 63.22 |
| Zm00001d033704_P007 | Maize | extracellular | 78.81 | 63.01 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 77.46 | 62.86 |
| Zm00001d013453_P001 | Maize | nucleus | 78.14 | 62.81 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 77.46 | 62.69 |
| Os03t0708600-02 | Rice | nucleus | 77.12 | 61.82 |
| PGSC0003DMT400024330 | Potato | cytosol | 69.83 | 61.58 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 68.64 | 61.18 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 65.42 | 59.48 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 77.46 | 59.35 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 65.08 | 59.17 |
| KXG37746 | Sorghum | nucleus | 79.15 | 57.8 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 77.46 | 57.05 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 68.81 | 56.47 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 61.36 | 56.21 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 56.61 | 55.85 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 30.34 | 54.74 |
| OQU83862 | Sorghum | nucleus | 58.14 | 53.43 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 30.0 | 46.58 |
| CDY47978 | Canola | plastid | 26.44 | 37.32 |
| CDY10596 | Canola | nucleus | 28.98 | 34.27 |
| CDY02459 | Canola | cytosol | 28.98 | 34.27 |
| CDX98304 | Canola | cytosol, plastid | 26.61 | 34.06 |
| CDX87315 | Canola | cytosol | 27.8 | 31.66 |
| CDY06034 | Canola | cytosol | 30.85 | 31.65 |
| CDY61276 | Canola | cytosol | 27.8 | 31.6 |
| CDY39973 | Canola | cytosol | 27.63 | 31.47 |
| CDY38671 | Canola | cytosol | 27.46 | 31.21 |
| CDX71948 | Canola | cytosol | 31.02 | 30.65 |
| CDX67949 | Canola | cytosol | 27.63 | 29.96 |
| CDY14843 | Canola | cytosol, plastid | 30.68 | 29.58 |
| CDX67749 | Canola | cytosol | 30.17 | 29.57 |
| CDY49232 | Canola | cytosol | 31.19 | 29.44 |
| CDY65864 | Canola | nucleus | 26.61 | 29.4 |
| CDY48128 | Canola | cytosol | 29.49 | 29.29 |
| CDY66221 | Canola | nucleus | 26.61 | 29.29 |
| CDX98301 | Canola | cytosol | 29.83 | 29.28 |
| CDY16735 | Canola | cytosol | 29.32 | 29.27 |
| CDX67752 | Canola | cytosol | 31.19 | 29.07 |
| CDX71944 | Canola | cytosol | 31.19 | 29.02 |
| CDY41747 | Canola | nucleus | 26.44 | 28.89 |
| CDX83333 | Canola | nucleus | 30.0 | 27.79 |
| CDX91943 | Canola | cytosol | 28.98 | 25.71 |
| CDX84112 | Canola | nucleus | 12.88 | 25.33 |
| CDY72529 | Canola | cytosol | 26.61 | 25.2 |
| CDY28671 | Canola | cytosol | 27.97 | 24.89 |
| CDX74304 | Canola | cytosol | 28.98 | 24.85 |
| CDX80096 | Canola | cytosol | 30.51 | 24.73 |
| CDY37796 | Canola | cytosol | 30.68 | 24.66 |
| CDX95719 | Canola | cytosol | 30.51 | 24.49 |
| CDX91036 | Canola | cytosol | 27.63 | 23.83 |
| CDX79384 | Canola | cytosol | 15.08 | 22.82 |
| CDX88990 | Canola | cytosol, plastid | 20.68 | 21.86 |
| CDX85591 | Canola | cytosol | 27.8 | 21.81 |
| CDY44720 | Canola | nucleus | 30.17 | 20.6 |
| CDY41597 | Canola | nucleus | 25.42 | 19.4 |
| CDX74101 | Canola | cytosol | 26.61 | 17.92 |
| CDY08048 | Canola | nucleus | 26.44 | 17.73 |
| CDY31513 | Canola | nucleus | 31.69 | 16.91 |
| CDY00570 | Canola | nucleus | 14.41 | 14.0 |
| CDX91039 | Canola | cytosol | 2.2 | 7.43 |
| CDX91037 | Canola | cytosol | 2.2 | 7.43 |
Protein Annotations
| MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | GO:A0A078IV44 | UniProt:A0A078IV44 | EnsemblPlants:CDY53786 | ProteinID:CDY53786 |
| ProteinID:CDY53786.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00011445001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 |
| InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE5E3A | SEG:seg |
Description
BnaC04g44100DBnaC04g44100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV44]
Coordinates
chrLK033237:+:41193..43687
Molecular Weight (calculated)
67928.1 Da
IEP (calculated)
9.059
GRAVY (calculated)
-0.785
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSINDVVG STSDAKKPVF LTKAQREELA LKRRQDQISD QRLRREQLAL LNPDDEDSND RDRDRDRERD RDRDRRERDR EPDRRIRERE REEEAKAREA
101: ARVEKLVERE REKELDSIKE QYLGGKKPKK RLLFGRRRET RSARRTEHWS DKRLEEMSER DWRIFREDFN ISYKGSKIPR PMRSWEETGY KKPSPIQMAA
201: IPLGLQQRDV IGIAETGSGK TAAFVLPMLA YISRLPPMSE ENETEGPYAV VMAPTRELAQ QIEEETVKFA HYLGFRVTSI VGGQSIEEQG LKITQGCEIV
301: IATPGRLIDC LERRYAVLNQ CNYVVLDEAD RMIDMGFEPQ VAGVLDAMPS SNLKPENEEE ELDEKKIYRT TYMFSATMPP GVERLARKYL RNPVVVTIGT
401: AGKATDLISQ HVIMMKESEK FFRLQKLLDE LSDKTAIVFV NTKKNCDSIA KNLDKAGYRV TTLHGGKSQE QREISLEGFR AKRYNVLVAT DVVGRGIDIP
501: DVAHVINYDM PKHIEMYTHR IGRTGRAGKS GVATSFLTLH DTDVFYDLKQ MLVQSNSAVP PELARHEASR FKPGTVPDRP PRHSDTVYIN
101: ARVEKLVERE REKELDSIKE QYLGGKKPKK RLLFGRRRET RSARRTEHWS DKRLEEMSER DWRIFREDFN ISYKGSKIPR PMRSWEETGY KKPSPIQMAA
201: IPLGLQQRDV IGIAETGSGK TAAFVLPMLA YISRLPPMSE ENETEGPYAV VMAPTRELAQ QIEEETVKFA HYLGFRVTSI VGGQSIEEQG LKITQGCEIV
301: IATPGRLIDC LERRYAVLNQ CNYVVLDEAD RMIDMGFEPQ VAGVLDAMPS SNLKPENEEE ELDEKKIYRT TYMFSATMPP GVERLARKYL RNPVVVTIGT
401: AGKATDLISQ HVIMMKESEK FFRLQKLLDE LSDKTAIVFV NTKKNCDSIA KNLDKAGYRV TTLHGGKSQE QREISLEGFR AKRYNVLVAT DVVGRGIDIP
501: DVAHVINYDM PKHIEMYTHR IGRTGRAGKS GVATSFLTLH DTDVFYDLKQ MLVQSNSAVP PELARHEASR FKPGTVPDRP PRHSDTVYIN
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Arabidopsis Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.