Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91943 | Canola | cytosol | 95.35 | 98.65 |
| Bra001004.1-P | Field mustard | cytosol | 88.81 | 96.07 |
| AT3G01540.2 | Thale cress | cytosol | 79.22 | 88.05 |
| CDY28671 | Canola | cytosol | 82.7 | 85.82 |
| CDX91036 | Canola | cytosol | 69.62 | 70.03 |
| CDX85591 | Canola | cytosol | 72.09 | 65.96 |
| PGSC0003DMT400080614 | Potato | nucleus | 58.14 | 65.25 |
| Solyc12g035130.1.1 | Tomato | nucleus | 57.56 | 64.71 |
| CDX91039 | Canola | cytosol | 15.7 | 61.71 |
| CDX91037 | Canola | cytosol | 15.7 | 61.71 |
| Solyc02g086660.2.1 | Tomato | nucleus | 60.9 | 59.35 |
| PGSC0003DMT400001391 | Potato | cytosol | 61.19 | 57.67 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 54.07 | 57.23 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 54.22 | 57.12 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 53.92 | 57.08 |
| Zm00001d008725_P003 | Maize | cytosol | 56.83 | 56.42 |
| KRH56577 | Soybean | nucleus | 62.79 | 55.74 |
| Zm00001d039673_P002 | Maize | cytosol | 56.25 | 55.21 |
| KRG93254 | Soybean | endoplasmic reticulum | 62.21 | 55.15 |
| OQU86230 | Sorghum | cytosol | 56.1 | 53.99 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 54.36 | 52.9 |
| Os01t0172200-01 | Rice | cytosol | 55.96 | 50.72 |
| KXG32714 | Sorghum | nucleus | 57.7 | 50.19 |
| VIT_14s0066g01020.t01 | Wine grape | cytosol | 62.65 | 49.94 |
| Zm00001d011155_P012 | Maize | nucleus | 56.83 | 49.94 |
| GSMUA_Achr8P31890_001 | Banana | nucleus | 56.54 | 49.49 |
| Os01t0549400-01 | Rice | nucleus | 56.4 | 48.99 |
| Zm00001d044510_P002 | Maize | mitochondrion | 56.83 | 48.75 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 55.38 | 47.1 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 52.91 | 46.49 |
| CDY10596 | Canola | nucleus | 33.58 | 46.29 |
| CDY02459 | Canola | cytosol | 33.43 | 46.09 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 52.47 | 45.99 |
| CDY47978 | Canola | plastid | 24.85 | 40.91 |
| CDY16735 | Canola | cytosol | 34.45 | 40.1 |
| CDY48128 | Canola | cytosol | 34.59 | 40.07 |
| CDX74101 | Canola | cytosol | 48.98 | 38.47 |
| CDY08048 | Canola | nucleus | 48.84 | 38.18 |
| CDX98304 | Canola | cytosol, plastid | 24.71 | 36.88 |
| CDX84672 | Canola | cytosol | 23.4 | 36.02 |
| CDY41747 | Canola | nucleus | 26.74 | 34.07 |
| CDY66221 | Canola | nucleus | 26.31 | 33.77 |
| CDY65864 | Canola | nucleus | 26.02 | 33.52 |
| CDY06034 | Canola | cytosol | 27.91 | 33.39 |
| CDX71948 | Canola | cytosol | 28.63 | 33.0 |
| CDY14843 | Canola | cytosol, plastid | 29.07 | 32.68 |
| CDX98301 | Canola | cytosol | 28.34 | 32.45 |
| CDX67749 | Canola | cytosol | 28.34 | 32.39 |
| CDY49232 | Canola | cytosol | 28.92 | 31.84 |
| CDX67752 | Canola | cytosol | 29.22 | 31.75 |
| CDX71944 | Canola | cytosol | 28.78 | 31.23 |
| CDX84112 | Canola | nucleus | 13.23 | 30.33 |
| CDX87315 | Canola | cytosol | 22.82 | 30.31 |
| CDY38671 | Canola | cytosol | 22.82 | 30.25 |
| CDY61276 | Canola | cytosol | 22.82 | 30.25 |
| CDX67949 | Canola | cytosol | 23.84 | 30.15 |
| CDY39973 | Canola | cytosol | 22.53 | 29.92 |
| CDY53786 | Canola | nucleus | 24.85 | 28.98 |
| CDY37696 | Canola | nucleus | 24.27 | 28.31 |
| CDX83333 | Canola | nucleus | 25.58 | 27.63 |
| CDY72529 | Canola | cytosol | 23.69 | 26.16 |
| CDX79541 | Canola | nucleus | 23.55 | 25.76 |
| CDY37796 | Canola | cytosol | 27.18 | 25.48 |
| CDX88990 | Canola | cytosol, plastid | 20.64 | 25.45 |
| CDX80096 | Canola | cytosol | 26.89 | 25.41 |
| CDX95719 | Canola | cytosol | 26.89 | 25.17 |
| CDX79384 | Canola | cytosol | 12.79 | 22.56 |
| CDY44720 | Canola | nucleus | 25.73 | 20.49 |
| CDY41597 | Canola | nucleus | 22.67 | 20.18 |
| CDY00570 | Canola | nucleus | 15.26 | 17.3 |
| CDY31513 | Canola | nucleus | 25.29 | 15.73 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CDR5 | EnsemblPlants:CDX74304 | ProteinID:CDX74304 |
| ProteinID:CDX74304.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00112097001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00397 |
| ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF51045 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE2724 | InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg | : |
Description
BnaA03g27430D
Coordinates
chrLK031800:-:2129873..2133562
Molecular Weight (calculated)
75442.9 Da
IEP (calculated)
10.254
GRAVY (calculated)
-0.501
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAPSAVR YAPEDHSLPK PWKGLVDDRT GYLYFWNPET NVTQYERPQP PPNLPVSSSA SVQVPQASAV PNGSSYAPAK GGDDKYTRAS DGGPRRSRFS
101: EIDDRSGAPY LNGAANGLGN SLPPSSAPVS DISPEAYCRR HEITVSGGQV PAPLMSFETT GFPPELLRET HFITLGAMFA PGRSLCRTLY YYFSEVLAKD
201: LEWDQIFWEG LPKSSKLVVG PVNGVVMFHF TTGSRLKKRR PPTAGFSAPT PIQAQSWPIA MQGRDIVAIA KTGSGKTLGY LLPGFMHLQR VRNDSRMGPT
301: ILVLSPTREL ATQIQDEAVK FGRSSRISCT CLYGGAPKGP QLRDLERGAD IVVATPGRLN DILEMRRISL RQVSYLVLDE ADRMLDMGFE PQIRKIVKEI
401: PTKRQTLMYT ATWPKGVRKI AADLLVNPAQ VNIGNVDELV ANKSITQHIE VVAPMEKQRR LEQILRSQEP GSKVIIFCST KRMCDQLTRN LTRQFGAAAI
501: HGDKSQPERD NVLNQFRSGR TPVLVATDVA ARGLDVKDIR AVINYDFPNG VEDYVHRIGR TGRAGATGQA FTFFGDQDSK HASDLIKILE GANQRVPPQI
601: RDMAARGGGG MNKFSRWGPS SGGRGSDSGY GGRGGFGSRD SGMGSRSSNG WGRERERSRS PERFNRVPPP SSTGSPPRSF HEAMMKHR
101: EIDDRSGAPY LNGAANGLGN SLPPSSAPVS DISPEAYCRR HEITVSGGQV PAPLMSFETT GFPPELLRET HFITLGAMFA PGRSLCRTLY YYFSEVLAKD
201: LEWDQIFWEG LPKSSKLVVG PVNGVVMFHF TTGSRLKKRR PPTAGFSAPT PIQAQSWPIA MQGRDIVAIA KTGSGKTLGY LLPGFMHLQR VRNDSRMGPT
301: ILVLSPTREL ATQIQDEAVK FGRSSRISCT CLYGGAPKGP QLRDLERGAD IVVATPGRLN DILEMRRISL RQVSYLVLDE ADRMLDMGFE PQIRKIVKEI
401: PTKRQTLMYT ATWPKGVRKI AADLLVNPAQ VNIGNVDELV ANKSITQHIE VVAPMEKQRR LEQILRSQEP GSKVIIFCST KRMCDQLTRN LTRQFGAAAI
501: HGDKSQPERD NVLNQFRSGR TPVLVATDVA ARGLDVKDIR AVINYDFPNG VEDYVHRIGR TGRAGATGQA FTFFGDQDSK HASDLIKILE GANQRVPPQI
601: RDMAARGGGG MNKFSRWGPS SGGRGSDSGY GGRGGFGSRD SGMGSRSSNG WGRERERSRS PERFNRVPPP SSTGSPPRSF HEAMMKHR
001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
Arabidopsis Description
DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.