CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014568.1-P	Field mustard	cytosol	99.46	83.33
CDY47978	Canola	plastid	51.61	68.9
CDY00570	Canola	nucleus	70.25	64.58
CDX98304	Canola	cytosol, plastid	50.9	61.61
CDY06034	Canola	cytosol	50.9	49.39
CDX67749	Canola	cytosol	52.51	48.67
CDX71948	Canola	cytosol	51.97	48.58
CDX98301	Canola	cytosol	51.97	48.25
AT3G58510.2	Thale cress	cytosol	52.33	47.71
CDY14843	Canola	cytosol, plastid	51.43	46.9
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	50.54	45.34
CDX67752	Canola	cytosol	50.9	44.87
CDY49232	Canola	cytosol	50.18	44.8
KRH38030	Soybean	endoplasmic reticulum	48.39	44.19
CDX71944	Canola	cytosol	50.18	44.16
TraesCS4D01G148700.1	Wheat	golgi	47.49	44.09
TraesCS4B01G126000.1	Wheat	cytosol, plastid	47.49	44.09
Solyc03g052980.2.1	Tomato	nucleus	48.21	43.95
HORVU4Hr1G031280.1	Barley	cytosol, plastid	47.31	43.93
Zm00001d048924_P001	Maize	plasma membrane	47.49	43.59
KRH71800	Soybean	plastid	47.67	43.54
PGSC0003DMT400002828	Potato	cytosol	48.21	43.53
Os11t0599500-00	Rice	nucleus, plasma membrane	48.57	43.5
KXG28851	Sorghum	cytosol, plastid	47.85	42.72
TraesCS4A01G141400.1	Wheat	plastid	47.49	40.4
CDX84672	Canola	cytosol	21.68	27.07
CDY02459	Canola	cytosol	24.19	27.05
CDY10596	Canola	nucleus	24.19	27.05
CDY16735	Canola	cytosol	26.34	24.87
CDY48128	Canola	cytosol	26.34	24.75
CDY65864	Canola	nucleus	23.66	24.72
CDY66221	Canola	nucleus	23.66	24.63
CDY41747	Canola	nucleus	23.66	24.44
CDX87315	Canola	cytosol	21.68	23.36
CDY61276	Canola	cytosol	21.68	23.31
CDY38671	Canola	cytosol	21.68	23.31
CDY39973	Canola	cytosol	21.51	23.17
CDX83333	Canola	nucleus	25.99	22.76
CDX91036	Canola	cytosol	27.42	22.37
CDX67949	Canola	cytosol	21.68	22.24
CDY28671	Canola	cytosol	25.63	21.57
CDY72529	Canola	cytosol	24.01	21.51
CDX91943	Canola	cytosol	25.45	21.35
CDY53786	Canola	nucleus	21.86	20.68
CDX74304	Canola	cytosol	25.45	20.64
CDY37696	Canola	nucleus	21.68	20.51
CDX95719	Canola	cytosol	26.7	20.27
CDX85591	Canola	cytosol	27.24	20.21
CDX80096	Canola	cytosol	26.34	20.19
CDY37796	Canola	cytosol	26.16	19.89
CDX79541	Canola	nucleus	21.15	18.76
CDX79384	Canola	cytosol	12.9	18.46
CDX74101	Canola	cytosol	25.81	16.44
CDY44720	Canola	nucleus	25.45	16.44
CDY08048	Canola	nucleus	25.81	16.36
CDX84112	Canola	nucleus	8.42	15.67
CDY41597	Canola	nucleus	19.71	14.23
CDY31513	Canola	nucleus	25.27	12.75
CDX91037	Canola	cytosol	0.0	0.0
CDX91039	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078DIE4	EnsemblPlants:CDX88990	ProteinID:CDX88990
ProteinID:CDX88990.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00149102001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001611
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13516	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	SMART:SM00367	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52047
SUPFAM:SSF52540	UniParc:UPI0004EE787C	:	:	:	:

Description

BnaA04g01960D

Coordinates

chrLK031857:+:398989..402697

Molecular Weight (calculated)

62492.5 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.122

Length

558 amino acids

Sequence
(BLAST)

001: MACAQTGSGK TAAFCFPIIR GIMRDLHGER PPVRSFIHDK AKKFSYQTGV KVVVAYGGTP IDQQLMELEK GVDILVATPG RLNDLLERAT VSMQMIKFLA
101: LDEADRMLDM GFEPQIRKIV EQMDMPPRGV RQTMLFSATF PREIQRLASD FLSNYIFLAV GRVGSSTDSI TLKVEYVHDS DKRSHLMALL HAQRENGTEQ
201: SLTLVFVETK RGADTLENWL CMNEFPATSI HGDRTQQERE EALKSFKSGR TPIMVATDVA ARGLDIPHVA HVVNFDLPND IDEFVHRIVR TWREGESGVA
301: TTFFNENNAS LARELAEVMQ EADQKPRFRQ VKHINLDFSQ GIEDSHLQLV KSQCQDVLLS LECLNLNGHL VKHCRNIIDL NLSGCKSITD KGMQLVAESY
401: QDLESLNITR CVKITDDGLL HVLHKCSTLL TLNFYALSGQ SLQEADLRFL DLCGAQNLSD EGLTHMAKCI KLESLNLTWC VRITDSGVIT IANSCTSLEF
501: LSLFGIIGVT DRCLETLSQT CSATLTTLDV NGCIGIKRRS REELLQMFPR LTCFKVHS

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.