CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71800	Soybean	plastid	94.93	94.93
CDY47978	Canola	plastid	55.48	81.1
KRG97325	Soybean	endoplasmic reticulum	74.8	77.33
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	78.07	76.69
KRH58901	Soybean	nucleus	75.94	75.57
KRH31589	Soybean	nucleus	74.63	75.5
KRH42811	Soybean	endoplasmic reticulum	76.27	75.28
CDY06034	Canola	cytosol	69.56	73.91
CDX98304	Canola	cytosol, plastid	55.65	73.75
CDX98301	Canola	cytosol	72.5	73.71
CDX71948	Canola	cytosol	72.01	73.7
Solyc03g052980.2.1	Tomato	nucleus	73.81	73.69
Bra016869.1-P	Field mustard	cytosol, plastid	73.16	73.4
CDX67749	Canola	cytosol	72.01	73.09
CDY14843	Canola	cytosol, plastid	73.16	73.04
PGSC0003DMT400002828	Potato	cytosol	73.81	72.98
Bra003341.1-P	Field mustard	cytosol	72.83	72.95
Bra007399.1-P	Field mustard	cytosol	72.34	72.34
AT3G58510.2	Thale cress	cytosol	72.34	72.22
AT2G42520.2	Thale cress	nucleus, plastid	74.14	71.56
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.72	70.88
TraesCS4D01G148700.1	Wheat	golgi	69.72	70.88
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.56	70.72
Os11t0599500-00	Rice	nucleus, plasma membrane	72.01	70.63
Zm00001d048924_P001	Maize	plasma membrane	69.72	70.07
CDX67752	Canola	cytosol	72.34	69.83
CDY49232	Canola	cytosol	70.7	69.12
AT3G58570.1	Thale cress	cytosol	72.83	68.89
KXG28851	Sorghum	cytosol, plastid	70.05	68.48
Bra003343.1-P	Field mustard	cytosol	72.01	68.43
CDX71944	Canola	cytosol	70.54	67.98
Bra007402.1-P	Field mustard	cytosol	70.7	67.29
TraesCS4A01G141400.1	Wheat	plastid	69.56	64.79
KRH20283	Soybean	plastid	56.63	59.04
KRH03709	Soybean	plastid	56.96	57.05
Bra014568.1-P	Field mustard	cytosol	56.63	51.95
CDX88990	Canola	cytosol, plastid	44.19	48.39
KRH44155	Soybean	cytosol	31.1	37.48
CDY00570	Canola	nucleus	36.99	37.23
KRH47127	Soybean	nucleus	30.77	37.08
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.68	34.24
KRH30661	Soybean	endoplasmic reticulum	31.42	33.98
KRG98124	Soybean	endoplasmic reticulum	31.59	33.8
KRH03228	Soybean	nucleus	32.9	33.39
KRH57127	Soybean	endoplasmic reticulum, nucleus	33.06	33.01
KRH39630	Soybean	nucleus	28.15	32.03
KRH74291	Soybean	nucleus	27.82	31.66
KRH68534	Soybean	cytosol	28.64	29.81
KRG94409	Soybean	cytosol	28.64	29.76
KRH56577	Soybean	nucleus	34.7	27.35
KRG93254	Soybean	endoplasmic reticulum	34.53	27.19
KRH51212	Soybean	nucleus	30.77	26.82
KRH01937	Soybean	nucleus	30.93	26.77
KRG96540	Soybean	cytosol, mitochondrion	32.73	26.04
KRH68277	Soybean	nucleus	32.73	25.58
KRH36905	Soybean	nucleus	36.01	18.88
KRH11875	Soybean	endoplasmic reticulum	36.17	18.4
KRH77709	Soybean	nucleus	30.28	16.76
KRH27757	Soybean	nucleus	30.28	16.71

Protein Annotations

EntrezGene:100818326	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02005584	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_09G105300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K7LD23	EnsemblPlants:KRH38030	ProteinID:KRH38030	ProteinID:KRH38030.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002338187	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:19537148..19554139

Molecular Weight (calculated)

66262.0 Da

IEP (calculated)

7.587

GRAVY (calculated)

-0.438

Length

611 amino acids

Sequence
(BLAST)

001: MRTSWADSAD NSTIGSGNSN SSACPPRGAY VPPHLRNRVF SSEVPPAASH PVAPGNDRVN HGGPAPHQGS GYFKADHGRQ PQQGFGYGSG FQSGGGGGWN
101: GRGAGRDRGR REANPFENVE AEDQSFSELE NTGINFDAYD DIPVETSGEN VPPPVNTFAE IDLGEALNQN IQRCKYVKPT PVQRYAIPIS LAGRDLMACA
201: QTGSGKTAAF CFPIISGIMR EQYAQRPRVA RTAYPLALIL SPTRELSCQI HDEAKKFSYQ TGVKVVVAYG GAPINQQLRE LERGVDILVA TPGRLVDLLE
301: RARVSLQMIR YLALDEADRM LDMGFEPQIR KIVEQMDMPP PGMRQTLLFS ATFPKEIQAL ASDFLSNYVF LAVGRVGSST DLIAQRVEYV LESDKRSHLM
401: DLLHAQRETG VNGKQGLTLV FVETKKGADA LEHCLCVNGF PAASIHGDRT QQERELALRS FKTGNTPILV ATDVAARGLD IPRVAHVVNF DLPNDIDDYV
501: HRIGRTGRAG KMGLATAFFN EGNLNLAKSL ADLMQEANQE VPAWLSRYAA RAIYSGGNRN RKSGGSRFGG RDFRKEGSFN KATDYYGSGT GGGYGGNYGG
601: GYGQGVTSAW D

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.