Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77709 | Soybean | nucleus | 96.66 | 96.92 |
| CDY72529 | Canola | cytosol | 40.83 | 72.55 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 72.0 | 69.49 |
| PGSC0003DMT400011665 | Potato | nucleus | 68.47 | 67.98 |
| AT3G09620.2 | Thale cress | nucleus | 60.7 | 67.88 |
| Solyc12g098700.1.1 | Tomato | nucleus | 69.65 | 67.22 |
| AT1G20920.3 | Thale cress | nucleus | 68.38 | 64.92 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 48.33 | 64.85 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 61.16 | 64.54 |
| CDY44720 | Canola | nucleus | 50.32 | 64.47 |
| CDY41597 | Canola | nucleus | 44.99 | 64.42 |
| CDY31513 | Canola | nucleus | 64.23 | 64.29 |
| Bra025856.1-P | Field mustard | nucleus | 67.84 | 64.13 |
| EES14596 | Sorghum | nucleus | 60.98 | 63.56 |
| OQU79814 | Sorghum | nucleus | 56.46 | 63.32 |
| Bra029779.1-P | Field mustard | nucleus | 50.59 | 63.13 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 60.52 | 62.85 |
| Zm00001d024533_P001 | Maize | nucleus | 60.34 | 62.72 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 59.89 | 62.37 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 57.63 | 62.12 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 59.89 | 61.85 |
| GSMUA_Achr10P... | Banana | cytosol | 53.21 | 58.84 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 53.3 | 58.01 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 51.31 | 55.74 |
| KRH47127 | Soybean | nucleus | 18.43 | 40.24 |
| KRH44155 | Soybean | cytosol | 18.34 | 40.04 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 16.71 | 38.87 |
| KRH03228 | Soybean | nucleus | 20.33 | 37.38 |
| KRG96540 | Soybean | cytosol, mitochondrion | 25.38 | 36.59 |
| KRH57127 | Soybean | endoplasmic reticulum, nucleus | 19.96 | 36.11 |
| KRH68277 | Soybean | nucleus | 25.29 | 35.81 |
| KRH68534 | Soybean | cytosol | 18.34 | 34.58 |
| KRG94409 | Soybean | cytosol | 18.34 | 34.52 |
| KRH39630 | Soybean | nucleus | 15.9 | 32.77 |
| KRH74291 | Soybean | nucleus | 15.81 | 32.59 |
| KRH30661 | Soybean | endoplasmic reticulum | 16.53 | 32.39 |
| KRG98124 | Soybean | endoplasmic reticulum | 16.62 | 32.22 |
| KRG97325 | Soybean | endoplasmic reticulum | 16.98 | 31.81 |
| KRH20283 | Soybean | plastid | 16.62 | 31.4 |
| KRH31589 | Soybean | nucleus | 17.07 | 31.29 |
| KRH51212 | Soybean | nucleus | 19.78 | 31.24 |
| KRH01937 | Soybean | nucleus | 19.78 | 31.02 |
| KRH42811 | Soybean | endoplasmic reticulum | 17.16 | 30.69 |
| KRH58901 | Soybean | nucleus | 16.98 | 30.62 |
| KRH71800 | Soybean | plastid | 16.89 | 30.61 |
| KRH38030 | Soybean | endoplasmic reticulum | 16.71 | 30.28 |
| KRH03709 | Soybean | plastid | 15.99 | 29.02 |
| KRG93254 | Soybean | endoplasmic reticulum | 17.62 | 25.13 |
| KRH56577 | Soybean | nucleus | 17.43 | 24.9 |
| KRH36905 | Soybean | nucleus | 17.98 | 17.08 |
| KRH11875 | Soybean | endoplasmic reticulum | 18.43 | 16.99 |
Protein Annotations
| EntrezGene:100806467 | MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | EMBL:ACUP02006733 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| EnsemblPlantsGene:GLYMA_11G012200 | GO:GO:0000166 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| UniProt:I1LG22 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | ProteinID:KRH27754.1 | ProteinID:KRH27755.1 |
| ProteinID:KRH27756.1 | EnsemblPlants:KRH27757 | ProteinID:KRH27757 | ProteinID:KRH27757.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000233CFAE | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:860929..866110
Molecular Weight (calculated)
125759.0 Da
IEP (calculated)
6.509
GRAVY (calculated)
-1.049
Length
1107 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEGKHKSRK ENHEVKDGDS KRSHRDRDRD RTGERGKDKN DGRHRDKEKR DRESRRHERE STDSEDRYDR DREKLKDKDK DVDRERGRDK KRERDRERER
0101: TDRVREKERE RERKEDKERI RERERERKDH EREKEKERER GRKARGREKR REVDSDCSDG ESKERDRKRH RKEDGDYKRE RERSVSKSSR KSEEHEGSPR
0201: KKSGGDDSDT KDEEKKPTRE EEMEDEQKRL DEEMEKRRRR VQEWQELRRK REEAEREKHG EASANEPESG KTWTLEGESD DEEGPGTGKQ TGMDVDEDDK
0301: PADKEPKDVM VVDTVNGTIA SDLQDGPAGA PEDEEIDPLD AFMNSMVLPE VEKLNNAVTS SLSGKAIDVK PKDKGNEQNR GAQSRKVSNK SIGRIIPGEE
0401: SDSDYADDEV EKDPLDEDDD EFMKRVKKTK AEKLSLVDHS KIVYEPFKKN FYIEVKEVSK MTPEESAVYR KQLELKIHGK DVPKPIKSWH QTGLASKILE
0501: TIKKMNFEKP MPIQAQALPV IMSGRDCIGI AKTGSGKTLA FVLPMLRHIK DQPPVVAGDG PIGLIMAPTR ELVQQIHSDI KKFAKVLGLR CVPVYGGSGV
0601: AQQISELKRG AEIVVCTPGR MIDILCTSSG KITNLHRVTY LVMDEADRMF DMGFEPQITR IVQNIRPDRQ TVLFSATFPR QVEILARKVL NKPVEIQVGG
0701: RSVVNKDITQ LVEVRPDNER FLRLLEILGE WYEKGKILIF VHSQEKCDSL FKDLLRHGYP CLSLHGAKDQ TDRESTISDF KSNVCNLLVA TSIAARGLDV
0801: KELELVINFD VPNHYEDYVH RVGRTGRAGR KGCAITFISE EEARYAPDLL KALELSEQTV PNDLKALAGS FMAKVNQGLE QAHGTGYGGS GFKFNEEEDE
0901: VRKAAKKAQA KEYGFEEEKS DSEDEDEGIR KAGGDISQHS AFAQIIAATK GNVPALPTPM LLPSLPVLPG TGLPLPANEG AARAAAIAAL NLQDKLDKIR
1001: SEALPEHYEA ELEINDFPQN ARWKVTHKET LGPISEWSGA AITTRGQFFP PGKIPGPGER KLYLFIEGPT EHSVKSAKAD LKRVLEDITN QAMQLPGGTQ
1101: PGKYSVV
0101: TDRVREKERE RERKEDKERI RERERERKDH EREKEKERER GRKARGREKR REVDSDCSDG ESKERDRKRH RKEDGDYKRE RERSVSKSSR KSEEHEGSPR
0201: KKSGGDDSDT KDEEKKPTRE EEMEDEQKRL DEEMEKRRRR VQEWQELRRK REEAEREKHG EASANEPESG KTWTLEGESD DEEGPGTGKQ TGMDVDEDDK
0301: PADKEPKDVM VVDTVNGTIA SDLQDGPAGA PEDEEIDPLD AFMNSMVLPE VEKLNNAVTS SLSGKAIDVK PKDKGNEQNR GAQSRKVSNK SIGRIIPGEE
0401: SDSDYADDEV EKDPLDEDDD EFMKRVKKTK AEKLSLVDHS KIVYEPFKKN FYIEVKEVSK MTPEESAVYR KQLELKIHGK DVPKPIKSWH QTGLASKILE
0501: TIKKMNFEKP MPIQAQALPV IMSGRDCIGI AKTGSGKTLA FVLPMLRHIK DQPPVVAGDG PIGLIMAPTR ELVQQIHSDI KKFAKVLGLR CVPVYGGSGV
0601: AQQISELKRG AEIVVCTPGR MIDILCTSSG KITNLHRVTY LVMDEADRMF DMGFEPQITR IVQNIRPDRQ TVLFSATFPR QVEILARKVL NKPVEIQVGG
0701: RSVVNKDITQ LVEVRPDNER FLRLLEILGE WYEKGKILIF VHSQEKCDSL FKDLLRHGYP CLSLHGAKDQ TDRESTISDF KSNVCNLLVA TSIAARGLDV
0801: KELELVINFD VPNHYEDYVH RVGRTGRAGR KGCAITFISE EEARYAPDLL KALELSEQTV PNDLKALAGS FMAKVNQGLE QAHGTGYGGS GFKFNEEEDE
0901: VRKAAKKAQA KEYGFEEEKS DSEDEDEGIR KAGGDISQHS AFAQIIAATK GNVPALPTPM LLPSLPVLPG TGLPLPANEG AARAAAIAAL NLQDKLDKIR
1001: SEALPEHYEA ELEINDFPQN ARWKVTHKET LGPISEWSGA AITTRGQFFP PGKIPGPGER KLYLFIEGPT EHSVKSAKAD LKRVLEDITN QAMQLPGGTQ
1101: PGKYSVV
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.