Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G294500.1 | Wheat | nucleus | 93.25 | 96.79 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 94.93 | 95.2 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 95.68 | 95.15 |
| Zm00001d024533_P001 | Maize | nucleus | 81.61 | 81.69 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 78.8 | 80.08 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 69.14 | 72.33 |
| CDY72529 | Canola | cytosol | 41.37 | 70.79 |
| OQU79814 | Sorghum | nucleus | 64.92 | 70.11 |
| AT3G09620.2 | Thale cress | nucleus | 56.85 | 61.21 |
| KRH77709 | Soybean | nucleus | 62.95 | 60.78 |
| KRH27757 | Soybean | nucleus | 62.85 | 60.52 |
| CDY44720 | Canola | nucleus | 48.97 | 60.42 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 64.92 | 60.33 |
| PGSC0003DMT400011665 | Potato | nucleus | 62.66 | 59.91 |
| Solyc12g098700.1.1 | Tomato | nucleus | 64.26 | 59.72 |
| Bra029779.1-P | Field mustard | nucleus | 49.25 | 59.19 |
| CDY41597 | Canola | nucleus | 42.12 | 58.09 |
| CDY31513 | Canola | nucleus | 59.76 | 57.59 |
| AT1G20920.3 | Thale cress | nucleus | 62.66 | 57.29 |
| Bra025856.1-P | Field mustard | nucleus | 62.76 | 57.13 |
| GSMUA_Achr10P... | Banana | cytosol | 53.0 | 56.44 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 9.19 | 37.55 |
| HORVU3Hr1G092610.1 | Barley | cytosol | 20.17 | 37.46 |
| HORVU3Hr1G092600.1 | Barley | cytosol | 20.17 | 37.46 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 19.14 | 37.29 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 8.16 | 34.66 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 17.07 | 34.34 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 24.86 | 33.38 |
| HORVU5Hr1G048040.1 | Barley | plastid | 16.79 | 31.29 |
| HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 16.98 | 30.12 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 16.7 | 29.77 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 17.64 | 29.47 |
| HORVU5Hr1G109340.2 | Barley | plastid | 18.11 | 29.15 |
| HORVU7Hr1G084210.1 | Barley | cytosol | 16.42 | 28.69 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 8.54 | 27.83 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 18.39 | 27.72 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 19.89 | 27.53 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 8.54 | 23.95 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 19.14 | 14.76 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | UniProt:A0A287E626 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU0Hr1G020490 | EnsemblPlants:HORVU0Hr1G020490.1 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI000B478519 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:107683183..107688170
Molecular Weight (calculated)
120644.0 Da
IEP (calculated)
6.073
GRAVY (calculated)
-0.945
Length
1066 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGEDDRVT VSKHHHRNKD KDRDHSSSRR HRDKDRPSSR HHRDDRNGER ERDRDRDRHH RDKERDREER KARERAEKER EKEEKREKER ERERERERER
0101: EREEREMEKE RERVRRREER GREKEKSRRR ETVDEEENED GERDRKRRRR SHRHHHRDVE PEEIPLTREE EEDAEEVEKR RQKKEEDMEA EQQRLDDEME
0201: RRRRRVKEWQ EKKRREQQQE DGASGGAAAI DADGGGKSVK KWTLDGEESD EEDVKKLEEN GGTGAMDVDL PNMDNGSNSG AGLEEDEIDP LDAFMDSMVL
0301: PVVAKLESAT AATESVLAGN AGGLNDNSVK DVKGNEDKKR QMMAIGRIMQ GDDSDSDYGD AVNDEAGSDD EDDAEFIKRV KKTKAEKLVI VDHSKIDYQP
0401: FRKNFYIEVK DIKNMPAEEA AAYRKLLELK VHGKDVPKPI KTWIQSGLTS KLLDTIKKLG FDKPMPIQAQ ALPVIMSGRD CIGVAKTGSG KTLAFVLPML
0501: RHVKDQPPVV PGDGPIGLIM APTRELVVQI YSDIKKFSKV LGINCVPIYG GSGVAQQISE LKRGAEIVVC TPGRMIDILC TSSGKITNLR RVTFLVLDEA
0601: DRMFDMGFEP QITRIVQNTR PDRQTVLFSA TFPRQVEILA RKVLTKPVEI QMGGRSVVNK DITQLVEVRP ESERFFRLLE LLGEWFANGK ILVFVQSQDK
0701: CDSLLKELFQ HGYPCLSLHG GKDQNDREST LADFKSNVCS LLVATSIAAR GLDVKDLELV VNYDVTNHYE DYVHRVGRTG RAGRKGCAVT FISEEEERYA
0801: PDLVKALELS EQAVPEDLKA LADRFMSKVK QGTEQAHGTG YGGSGFKFNE EEEEARKSAK RAQAREYGYE EDKSDSDSDD EGGVRKQGGD VAAQAIAAAQ
0901: AAAALAAARA TSNAHQQVPA TTAGSLLPLP VAPNQQNNDA TQRALDAAYN LQKNLARIQA HAVPEHYEAE LEINDFPQNA RWKITHKETL VPIQEWTGAA
1001: ITTRGTFIPQ GKIVGANERK LYLFIEGPNE SSVKKAKAEL KRVLEDCANQ ALNLPGSAQT GKYSVL
0101: EREEREMEKE RERVRRREER GREKEKSRRR ETVDEEENED GERDRKRRRR SHRHHHRDVE PEEIPLTREE EEDAEEVEKR RQKKEEDMEA EQQRLDDEME
0201: RRRRRVKEWQ EKKRREQQQE DGASGGAAAI DADGGGKSVK KWTLDGEESD EEDVKKLEEN GGTGAMDVDL PNMDNGSNSG AGLEEDEIDP LDAFMDSMVL
0301: PVVAKLESAT AATESVLAGN AGGLNDNSVK DVKGNEDKKR QMMAIGRIMQ GDDSDSDYGD AVNDEAGSDD EDDAEFIKRV KKTKAEKLVI VDHSKIDYQP
0401: FRKNFYIEVK DIKNMPAEEA AAYRKLLELK VHGKDVPKPI KTWIQSGLTS KLLDTIKKLG FDKPMPIQAQ ALPVIMSGRD CIGVAKTGSG KTLAFVLPML
0501: RHVKDQPPVV PGDGPIGLIM APTRELVVQI YSDIKKFSKV LGINCVPIYG GSGVAQQISE LKRGAEIVVC TPGRMIDILC TSSGKITNLR RVTFLVLDEA
0601: DRMFDMGFEP QITRIVQNTR PDRQTVLFSA TFPRQVEILA RKVLTKPVEI QMGGRSVVNK DITQLVEVRP ESERFFRLLE LLGEWFANGK ILVFVQSQDK
0701: CDSLLKELFQ HGYPCLSLHG GKDQNDREST LADFKSNVCS LLVATSIAAR GLDVKDLELV VNYDVTNHYE DYVHRVGRTG RAGRKGCAVT FISEEEERYA
0801: PDLVKALELS EQAVPEDLKA LADRFMSKVK QGTEQAHGTG YGGSGFKFNE EEEEARKSAK RAQAREYGYE EDKSDSDSDD EGGVRKQGGD VAAQAIAAAQ
0901: AAAALAAARA TSNAHQQVPA TTAGSLLPLP VAPNQQNNDA TQRALDAAYN LQKNLARIQA HAVPEHYEAE LEINDFPQNA RWKITHKETL VPIQEWTGAA
1001: ITTRGTFIPQ GKIVGANERK LYLFIEGPNE SSVKKAKAEL KRVLEDCANQ ALNLPGSAQT GKYSVL
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.