Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G20920.3 | Thale cress | nucleus | 84.24 | 71.53 |
| CDY41597 | Canola | nucleus | 50.4 | 64.55 |
| CDY44720 | Canola | nucleus | 55.66 | 63.77 |
| Bra029779.1-P | Field mustard | nucleus | 55.76 | 62.23 |
| KRH77709 | Soybean | nucleus | 68.08 | 61.05 |
| KRH27757 | Soybean | nucleus | 67.88 | 60.7 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 50.51 | 60.61 |
| PGSC0003DMT400011665 | Potato | nucleus | 67.68 | 60.09 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 68.48 | 59.11 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 62.32 | 58.82 |
| Solyc12g098700.1.1 | Tomato | nucleus | 67.88 | 58.59 |
| EES14596 | Sorghum | nucleus | 61.72 | 57.53 |
| Zm00001d024533_P001 | Maize | nucleus | 61.72 | 57.37 |
| OQU79814 | Sorghum | nucleus | 56.77 | 56.94 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 61.21 | 56.85 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 60.61 | 56.44 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 58.38 | 56.28 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 60.81 | 56.16 |
| GSMUA_Achr10P... | Banana | cytosol | 53.94 | 53.35 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 52.22 | 50.84 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 51.62 | 50.15 |
| AT1G28180.1 | Thale cress | cytosol | 13.54 | 36.41 |
| AT5G63120.2 | Thale cress | cytosol | 21.01 | 35.19 |
| AT1G55150.2 | Thale cress | cytosol | 18.59 | 34.98 |
| AT2G47330.1 | Thale cress | cytosol | 25.96 | 33.82 |
| AT5G51280.1 | Thale cress | cytosol | 18.89 | 31.64 |
| AT4G33370.1 | Thale cress | cytosol | 17.07 | 31.18 |
| AT1G31970.1 | Thale cress | cytosol | 16.36 | 30.17 |
| AT3G58510.2 | Thale cress | cytosol | 18.48 | 29.9 |
| AT3G58570.1 | Thale cress | cytosol | 19.19 | 29.41 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 18.48 | 28.91 |
| AT3G01540.2 | Thale cress | cytosol | 17.27 | 27.63 |
| AT5G14610.1 | Thale cress | cytosol | 18.28 | 25.42 |
| AT2G33730.1 | Thale cress | nucleus | 18.38 | 24.83 |
| AT3G06480.1 | Thale cress | cytosol | 19.09 | 17.37 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | EntrezGene:820119 | UniProt:A0A1I9LRR1 | ProteinID:ANM65269.1 | ArrayExpress:AT3G09620 |
| EnsemblPlantsGene:AT3G09620 | RefSeq:AT3G09620 | TAIR:AT3G09620 | RefSeq:AT3G09620-TAIR-G | EnsemblPlants:AT3G09620.2 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | RefSeq:NP_001327248.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0008491527 | SEG:seg |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRR1]
Coordinates
chr3:-:2949152..2952220
Molecular Weight (calculated)
111763.0 Da
IEP (calculated)
5.511
GRAVY (calculated)
-0.848
Length
990 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLEKSKSRK ENDRKDRDRS KKENGRRDTT EMRSRVKRCD SEEEERIRIR RDRKSSDFEE EEYERDSKRR GEDKGRGRRE RDRDRGKYLK RDRERREREK
101: EKGRKKQKKE RSREDCNEES DDVKCGLKRK RTERSRHGDD DVEKKTRDEQ VEDEQKQLAE EVEKRRRRVQ EWQELKRQNE EAQIESKGPE TGKAWTLDGE
201: SDDEVKSDSE MDVDRDTKLE NGGDAKMVAS ENETAVTVSE NGGDRAADED EIDPLDAFMN TMVLPEVEKL SNIVIDGILD FKMNGKETGD QAKKGFNKAA
301: LGRIIQGEDS DSDYSEPKSD DDPSLDEDDE EFMKRVKKTK AEKLSLVDHS KIEYEPFRKN FYIEVKDISR MTQDAVNAYR KELELKVHGK DVPRPIQFWH
401: QTGLTSKILD TLKKLNYEKP MPIQAQALPI IMSGRDCIGV AKTGSGKTLG FVLPMLRHIK DQPPVEAGDG PIGLVMAPTR ELVQQIYSDI RKFSKALGII
501: CVPVYGGSGV AQQISELKRG TEIVVCTPGR MIDILCTSSG KITNLRRVTY LVMDEADRMF DMGFEPQITR IVQNIRPDRQ TVLFSATFPR QVETLARKVL
601: NKPVEIQVGG RSVVNKDITQ LVEIRPESER FSRLLELLGE WYEKGKVLVF VRSQEKSISD FKSDVCNLLI ATSVAARGLD VKELELVVNF DAPNHYEDYV
701: HRVGRTGRAG RKGCAVTFIS EDDAKYAPDL VKALELSEQP VPDDVKAVAE GFMAKVKQGI EQAHGTGYGG SGFKFNEEED EVRKAAKKAQ AKEYGFEEEK
801: SDSEDENDVV RKAGGDISQQ QITLAQIAAI ASAASKAPVT ANQLLPNGGG LATEPGIPPT DGAGRVAAMI AAANVQQYLA KIQADAIPEH YEAELEINDF
901: PQNARWKVTH KETLGPISEW SGASITTRGK FYEAGRIPGP EERKLYLFVE GPTEISVKTA KAELKRVLED ITNQTFSLPG GAQSGRYSVL
101: EKGRKKQKKE RSREDCNEES DDVKCGLKRK RTERSRHGDD DVEKKTRDEQ VEDEQKQLAE EVEKRRRRVQ EWQELKRQNE EAQIESKGPE TGKAWTLDGE
201: SDDEVKSDSE MDVDRDTKLE NGGDAKMVAS ENETAVTVSE NGGDRAADED EIDPLDAFMN TMVLPEVEKL SNIVIDGILD FKMNGKETGD QAKKGFNKAA
301: LGRIIQGEDS DSDYSEPKSD DDPSLDEDDE EFMKRVKKTK AEKLSLVDHS KIEYEPFRKN FYIEVKDISR MTQDAVNAYR KELELKVHGK DVPRPIQFWH
401: QTGLTSKILD TLKKLNYEKP MPIQAQALPI IMSGRDCIGV AKTGSGKTLG FVLPMLRHIK DQPPVEAGDG PIGLVMAPTR ELVQQIYSDI RKFSKALGII
501: CVPVYGGSGV AQQISELKRG TEIVVCTPGR MIDILCTSSG KITNLRRVTY LVMDEADRMF DMGFEPQITR IVQNIRPDRQ TVLFSATFPR QVETLARKVL
601: NKPVEIQVGG RSVVNKDITQ LVEIRPESER FSRLLELLGE WYEKGKVLVF VRSQEKSISD FKSDVCNLLI ATSVAARGLD VKELELVVNF DAPNHYEDYV
701: HRVGRTGRAG RKGCAVTFIS EDDAKYAPDL VKALELSEQP VPDDVKAVAE GFMAKVKQGI EQAHGTGYGG SGFKFNEEED EVRKAAKKAQ AKEYGFEEEK
801: SDSEDENDVV RKAGGDISQQ QITLAQIAAI ASAASKAPVT ANQLLPNGGG LATEPGIPPT DGAGRVAAMI AAANVQQYLA KIQADAIPEH YEAELEINDF
901: PQNARWKVTH KETLGPISEW SGASITTRGK FYEAGRIPGP EERKLYLFVE GPTEISVKTA KAELKRVLED ITNQTFSLPG GAQSGRYSVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.