Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040699.1-P | Field mustard | cytosol | 85.78 | 87.19 |
| Bra001004.1-P | Field mustard | cytosol | 88.21 | 85.85 |
| CDX91943 | Canola | cytosol | 88.21 | 82.11 |
| CDY28671 | Canola | cytosol | 86.11 | 80.39 |
| CDX74304 | Canola | cytosol | 88.05 | 79.22 |
| AT5G14610.1 | Thale cress | cytosol | 80.61 | 70.08 |
| PGSC0003DMT400080614 | Potato | nucleus | 65.11 | 65.74 |
| Solyc12g035130.1.1 | Tomato | nucleus | 63.97 | 64.71 |
| Solyc02g086660.2.1 | Tomato | nucleus | 68.17 | 59.77 |
| PGSC0003DMT400001391 | Potato | cytosol | 68.17 | 57.81 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 60.42 | 57.54 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 60.1 | 57.23 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 60.26 | 57.12 |
| Zm00001d008725_P003 | Maize | cytosol | 63.65 | 56.85 |
| KRH56577 | Soybean | nucleus | 71.08 | 56.77 |
| KRG93254 | Soybean | endoplasmic reticulum | 70.6 | 56.31 |
| Zm00001d039673_P002 | Maize | cytosol | 62.36 | 55.06 |
| OQU86230 | Sorghum | cytosol | 62.84 | 54.41 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 60.74 | 53.18 |
| Os01t0172200-01 | Rice | cytosol | 63.33 | 51.65 |
| VIT_14s0066g01020.t01 | Wine grape | cytosol | 70.11 | 50.29 |
| KXG32714 | Sorghum | nucleus | 63.0 | 49.3 |
| Zm00001d011155_P012 | Maize | nucleus | 62.2 | 49.17 |
| GSMUA_Achr8P31890_001 | Banana | nucleus | 62.36 | 49.11 |
| Os01t0549400-01 | Rice | nucleus | 61.87 | 48.36 |
| Zm00001d044510_P002 | Maize | mitochondrion | 61.87 | 47.76 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 60.58 | 46.35 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 57.84 | 45.72 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 57.67 | 45.48 |
| AT1G55150.2 | Thale cress | cytosol | 37.0 | 43.54 |
| AT5G63120.2 | Thale cress | cytosol | 39.26 | 41.12 |
| AT1G28180.1 | Thale cress | cytosol | 22.46 | 37.77 |
| AT3G06480.1 | Thale cress | cytosol | 61.71 | 35.11 |
| AT1G31970.1 | Thale cress | cytosol | 28.76 | 33.15 |
| AT3G58510.2 | Thale cress | cytosol | 31.83 | 32.19 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 32.47 | 31.75 |
| AT4G33370.1 | Thale cress | cytosol | 27.14 | 31.0 |
| AT3G58570.1 | Thale cress | cytosol | 31.83 | 30.5 |
| AT5G51280.1 | Thale cress | cytosol | 26.33 | 27.58 |
| AT2G47330.1 | Thale cress | cytosol | 30.53 | 24.87 |
| AT2G33730.1 | Thale cress | nucleus | 28.59 | 24.15 |
| AT3G09620.2 | Thale cress | nucleus | 27.63 | 17.27 |
| AT1G20920.3 | Thale cress | nucleus | 28.43 | 15.09 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:821116 | ProteinID:AAF01539.1 | EMBL:AB010259 |
| ProteinID:AEE73683.1 | ProteinID:AEE73684.1 | ProteinID:AEE73685.1 | ProteinID:AEE73686.1 | EMBL:AF428313 | ArrayExpress:AT3G01540 |
| EnsemblPlantsGene:AT3G01540 | RefSeq:AT3G01540 | TAIR:AT3G01540 | RefSeq:AT3G01540-TAIR-G | EnsemblPlants:AT3G01540.2 | TAIR:AT3G01540.2 |
| EMBL:AY050375 | EMBL:AY062591 | EMBL:BT000795 | EMBL:BT009670 | InterPro:DEAD/DEAH_box_helicase_dom | Symbol:DRH1 |
| GO:GO:0000166 | GO:GO:0000184 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042254 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_001030619.1 | RefSeq:NP_566141.1 | RefSeq:NP_850492.1 |
| RefSeq:NP_974206.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00397 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00039 | ScanProsite:PS01159 |
| PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 |
| UniProt:Q8H136 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI00000A3D60 | InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg |
Description
RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
Coordinates
chr3:-:212671..216736
Molecular Weight (calculated)
67731.5 Da
IEP (calculated)
10.245
GRAVY (calculated)
-0.543
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.