Factsheet for Os01t0549400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32714	Sorghum	nucleus	81.31	81.42
Zm00001d044510_P002	Maize	mitochondrion	81.69	80.67
Zm00001d011155_P012	Maize	nucleus	77.4	78.29
TraesCS3D01G202500.3	Wheat	nucleus	79.04	77.38
TraesCS3A01G194200.1	Wheat	nucleus	76.01	76.88
TraesCS3B01G230800.1	Wheat	nucleus	76.14	76.82
Bra001004.1-P	Field mustard	cytosol	49.87	62.11
AT3G01540.2	Thale cress	cytosol	48.36	61.87
Bra040699.1-P	Field mustard	cytosol	47.22	61.41
PGSC0003DMT400080614	Potato	nucleus	47.22	61.01
Solyc12g035130.1.1	Tomato	nucleus	46.59	60.29
CDX91943	Canola	cytosol	48.74	58.05
Bra023478.1-P	Field mustard	cytosol	49.12	57.54
Solyc02g086660.2.1	Tomato	nucleus	51.01	57.22
GSMUA_Achr8P31890_001	Banana	nucleus	56.69	57.12
CDX91036	Canola	cytosol	48.74	56.43
CDY28671	Canola	cytosol	47.22	56.41
CDX74304	Canola	cytosol	48.99	56.4
PGSC0003DMT400001391	Potato	cytosol	51.77	56.16
KRG93254	Soybean	endoplasmic reticulum	53.28	54.38
KRH56577	Soybean	nucleus	53.16	54.32
AT5G14610.1	Thale cress	cytosol	47.85	53.23
Os01t0172200-01	Rice	cytosol	50.51	52.7
CDX85591	Canola	cytosol	48.99	51.6
VIT_14s0066g01020.t01	Wine grape	cytosol	55.18	50.64
Os01t0197200-01	Rice	plasma membrane	31.44	50.4
Os01t0911100-01	Rice	nucleus, plastid	24.62	40.88
Os06t0602400-01	Rice	nucleus, plasma membrane	23.11	37.81
Os07t0301200-01	Rice	cytosol	23.36	36.13
Os02t0150100-02	Rice	cytosol	20.45	35.22
Os11t0599500-00	Rice	nucleus, plasma membrane	26.39	33.55
Os03t0805200-01	Rice	plastid	26.01	32.34
Os07t0202100-01	Rice	nucleus	25.76	31.97
Os06t0697200-00	Rice	cytosol	21.59	27.63
Os03t0708600-02	Rice	nucleus	24.62	26.49
Os03t0308500-01	Rice	mitochondrion	24.24	24.94
Os02t0150000-00	Rice	mitochondrion	5.43	24.86
Os08t0154225-00	Rice	cytosol	16.67	22.18
Os08t0159900-01	Rice	extracellular, nucleus	22.47	16.97
Os01t0911000-01	Rice	nucleus	2.53	5.97
Os08t0154200-01	Rice	cytosol, nucleus	0.76	2.8

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4326190	EMBL:AK102720	EMBL:AK122104
ProteinID:BAD88050.1	ProteinID:BAD88051.1	ProteinID:BAF05209.1	ProteinID:BAS72626.1	ProteinID:BAS72627.1	InterPro:DEAD/DEAH_box_helicase_dom
ProteinID:EAZ12284.1	GO:GO:0000166	GO:GO:0000184	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0042254	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0549400	EnsemblPlants:Os01t0549400-01	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	UniProt:Q5JKF2
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045
SUPFAM:SSF52540	UniParc:UPI00004C2B66	InterPro:WW_dom	InterPro:WW_dom_sf	RefSeq:XP_015620980.1	RefSeq:XP_015620981.1
SEG:seg	:	:	:	:	:

Description

Similar to RNA helicase-like protein DB10. (Os01t0549400-01);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-02);Similar to predicted protein. (Os01t0549400-03);Similar to cDNA clone:J013059F16, full insert sequence. (Os01t0549400-04)

Coordinates

chr1:+:20522447..20528163

Molecular Weight (calculated)

87984.6 Da

IEP (calculated)

10.513

GRAVY (calculated)

-1.005

Length

792 amino acids

Sequence
(BLAST)

001: MSAGTAPAAP RYAPDDPSLP KPWRGLVDGT TGYLYYWNPE TNITQYEKPL PPEDQLPPPP PLPPPPPRSG RGDRDRDRRD RSRSRTPPRR DHRDRDRDRD
101: RRHDDHRSAP SHHHPLPAAA AIAADDPSTE AYRHRHEITV VGDNVPAPIT SFETGGFPPE ILKEIQRAGF SSPTPIQAQS WPIALQCQDV VAIAKTGSGK
201: TLGYLLPGFM HIKRLQNNPR SGPTVLVLAP TRELATQILE EAVKFGRSSR ISSTCLYGGA PKGPQLRDLD RGVDVVVATP GRLNDILEMR RISLKQVSYL
301: VLDEADRMLD MGFEPQIRKI VKEIPPRRQT LMYTATWPKE VRRIAEDLLV HPVQVTIGSV DELVANSAIT QNVELITPSE KLRRLEQILR SQDSGSKVLI
401: FCTTKRMCDQ LARTLTRQFG ASAIHGDKSQ SEREKVLSHF RSGRSPILVA TDVAARGLDI KDIRVVINYD FPTGIEDYVH RIGRTGRAGA TGVAYTFFCD
501: QDSKYAADLI KILEGANQRV PRDLADMASR GGRGGRKRNR WATRSDRGGS HSELDSRYGG RDGLSGSSGR LDSSRSSRRH DYGDDGRSRR SGRGRSRSRS
601: RSDSDRYSRS PKRSRRHSRS RTRSRSRSRS RSYTRNRRAS RSRSRSPGAS RRHERSATGS GSALPDSGHG ERKRTPEADP SRNHTNHSDP KDDRHPEDGK
701: VGKVDLDRSP TPQDKSGPYS PAYNGKTSRS VSPGNQVEGN NKAAEVSKNP DPSSPPHHGK TREDEEEGMI DEDGEIADDP RANATVQNGG DN

Best Arabidopsis Sequence Match ( AT3G01540.4 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.