Factsheet for Os07t0202100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
nucleus: 19621931
cytosol: 19685898
nucleus: 23303719
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0805200-01	Rice	plastid	87.77	87.91
KXG34634	Sorghum	plastid	86.99	85.91
Zm00001d007755_P001	Maize	plastid	85.89	84.7
Zm00001d007757_P004	Maize	plastid	86.52	83.38
GSMUA_Achr8P15350_001	Banana	plastid	71.79	77.23
GSMUA_Achr6P29700_001	Banana	plastid	68.65	75.78
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	71.0	74.75
Os11t0599500-00	Rice	nucleus, plasma membrane	71.79	73.52
GSMUA_Achr9P25390_001	Banana	mitochondrion	46.4	66.07
GSMUA_Achr4P17320_001	Banana	plastid	52.66	65.88
Os06t0602400-01	Rice	nucleus, plasma membrane	46.4	61.16
Os01t0197200-01	Rice	plasma membrane	29.0	37.45
Os02t0150100-02	Rice	cytosol	25.86	35.87
Os01t0911100-01	Rice	nucleus, plastid	24.92	33.33
Os07t0301200-01	Rice	cytosol	26.49	33.01
Os06t0697200-00	Rice	cytosol	26.65	27.46
Os01t0172200-01	Rice	cytosol	32.29	27.14
Os02t0150000-00	Rice	mitochondrion	7.21	26.59
Os03t0308500-01	Rice	mitochondrion	31.35	25.97
Os01t0549400-01	Rice	nucleus	31.97	25.76
Os03t0708600-02	Rice	nucleus	29.47	25.54
Os08t0154225-00	Rice	cytosol	22.57	24.2
Os08t0159900-01	Rice	extracellular, nucleus	30.09	18.3
Os08t0154200-01	Rice	cytosol, nucleus	1.41	4.21
Os01t0911000-01	Rice	nucleus	0.16	0.3

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4342669	EMBL:AB042644	EMBL:AK101736	ProteinID:BAC83834.1
ProteinID:BAF21049.1	ProteinID:BAT00508.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE66762.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os07g0202100	EnsemblPlants:Os07t0202100-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	UniProt:Q6Z4K6	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00001BF483	RefSeq:XP_015646994.1	SEG:seg

Description

RNA helicase 52BSimilar to ATP-dependent RNA helicase ded1. (Os07t0202100-01);Similar to DEAD-box ATP-dependent RNA helicase 52B. (Os07t0202100-02)

Coordinates

chr7:-:5500383..5506489

Molecular Weight (calculated)

67175.9 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.408

Length

638 amino acids

Sequence
(BLAST)

001: MRSSWADSAA NAEESAPAAA ANHGNSRLPR SSYVPPHLRG QAAPAAPAQA GALPSAAAAA QPSVGQPGVV GGPRWAGIVN GGGGGGGGSV GGSRQGFGAG
101: GRGGGGGGGG GAWNSRPGGW DRRDREPDPF ANSEAAEVDF EGENTGINFE AYEDIPVETS GHDVPPPANT FAEIDLGDAL NENIRRCKYV KPTPVQRYAI
201: PISIAGRDLM ACAQTGSGKT AAFCFPIISG IMRSRPPPRS RGSRTAYPLA LILSPTRELS VQIHEEARKF AYQTGVKVVV AYGGAPITQQ LRELERGVEI
301: LVATPGRLMD LLERARVSLQ MIKYLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGERQTM LFSATFPKEI QRMASDFLAD YIFLAVGRVG SSTDLIVQRV
401: EFVLDADKRS YLMDLLHAQR ANGTHGKQAL TLVFVETKRG ADALENWLYN NGFPATSIHG DRTQQEREYA LRSFKSGATP ILVATDVAAR GLDIPHVAHV
501: INFDLPNDID DYVHRIGRTG RAGKSGLATA FFNESNTPLA RPLSELMQEA NQEVPQWLER YAARSSFGGG GGRNRRSGGG ARFGGRDFRR DRGSGGGGYG
601: GGGGGYGGGG YGGGGGGGGY GGGSSYGGGG QGFSSAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.