Factsheet for GSMUA_Achr4P17320_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	73.92	62.21
GSMUA_Achr8P15350_001	Banana	plastid	71.18	61.21
GSMUA_Achr6P29700_001	Banana	plastid	63.92	56.4
Os03t0805200-01	Rice	plastid	67.06	53.69
Os07t0202100-01	Rice	nucleus	65.88	52.66
KXG34634	Sorghum	plastid	66.67	52.63
KXG37329	Sorghum	cytosol, plastid	65.1	52.28
Zm00001d007755_P001	Maize	plastid	66.27	52.24
Zm00001d007757_P004	Maize	plastid	66.27	51.06
TraesCS5B01G464500.2	Wheat	cytosol	63.33	50.95
TraesCS5D01G465100.1	Wheat	cytosol	63.33	50.79
TraesCS5A01G454600.1	Wheat	golgi	63.14	50.63
HORVU5Hr1G109340.2	Barley	plastid	63.33	48.79
GSMUA_Achr9P25390_001	Banana	mitochondrion	35.49	40.4
GSMUA_Achr5P06030_001	Banana	nucleus	49.8	35.33
GSMUA_Achr8P01340_001	Banana	cytosol	23.33	31.07
GSMUA_Achr10P...	Banana	cytosol	26.47	27.16
GSMUA_Achr11P...	Banana	nucleus	25.1	22.18
GSMUA_Achr3P01410_001	Banana	nucleus	21.96	21.25
GSMUA_Achr2P09160_001	Banana	cytosol	21.37	19.93
GSMUA_Achr1P13000_001	Banana	cytosol	26.86	19.74
GSMUA_Achr1P24870_001	Banana	cytosol	25.29	19.46
GSMUA_Achr1P13820_001	Banana	mitochondrion	20.59	19.37
GSMUA_Achr8P31890_001	Banana	nucleus	27.25	17.68
GSMUA_Achr1P15980_001	Banana	cytosol	27.25	13.16
GSMUA_Achr10P...	Banana	cytosol	22.16	11.29

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr4G17320_001	EnsemblPlants:GSMUA_Achr4P17320_001	EnsemblPlants:GSMUA_Achr4T17320_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0SPP5	InterPro:P-loop_NTPase
PFAM:PF00270	PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0002957001	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 37 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17320_001]

Coordinates

chr4:-:16823811..16835846

Molecular Weight (calculated)

56002.5 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.150

Length

510 amino acids

Sequence
(BLAST)

001: MRTSWADSVA NADSSAFATG ASASTTYSNA ADASAAAAAV AAPRPGRAAY VPPHLRNRTA SSEPPVPSPA DEMGRAGSVG GGRGMGDGWG SRSGGWDRRD
101: REINPFANED ETTEAAFDGP ENTGINFDAY EDIPVETSGE NVPPPVSTFS EIDLGDAVNE NIRRCKYVKP TPVQRHAIPI LLAGRDLMAC AQTGSGKTAA
201: FCFPIISWIM RGPPAQRQRV SRTAYPSALI LSPTRELSIQ IHEETRKFSY QTGVRVVVAY GGAPINQQLR DLERGVDILV ATPGRLVDLL ERARVSLQSI
301: RYLALDEADR MLDMGFEPQI RRIVEQMDMP ARGQRQTMLF SATFPSEIQR LASDFLSNYI FLAVGRVGSS TDLIVQRVEF VLDSDKRSHL MDLLHAQRVN
401: GAHGKQALTL VFVETKKGAD SLEHWLCMNE FPATTIHGDR TQQASESIID QMFYVENISS IVCYFVNCHK CISIFCDSLS LFCQFAVFIF ELSRVLCCIF
501: LNLTLLENNL

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.