Factsheet for GSMUA_Achr1P24870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13000_001	Banana	cytosol	87.33	83.43
VIT_07s0005g01600.t01	Wine grape	cytosol	80.69	69.39
KRG96540	Soybean	cytosol, mitochondrion	78.28	67.58
KRH68277	Soybean	nucleus	78.88	66.88
PGSC0003DMT400023277	Potato	cytosol	76.32	65.37
Solyc01g079330.2.1	Tomato	nucleus	76.32	65.37
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	75.41	65.27
CDX83333	Canola	nucleus	61.99	64.52
Os03t0308500-01	Rice	mitochondrion	74.81	64.42
Zm00001d047633_P002	Maize	nucleus	74.51	64.32
Zm00001d028898_P011	Maize	cytosol	73.45	63.25
CDX80096	Canola	cytosol	69.23	63.05
AT2G47330.1	Thale cress	cytosol	72.1	62.89
TraesCS4A01G121700.1	Wheat	mitochondrion	72.55	62.71
CDY37796	Canola	cytosol	69.38	62.67
TraesCS4B01G181800.1	Wheat	nucleus	72.4	62.66
Bra004464.1-P	Field mustard	cytosol	68.93	62.43
CDX95719	Canola	cytosol	68.93	62.18
Bra000447.1-P	Field mustard	cytosol	62.29	61.37
TraesCS4D01G184200.1	Wheat	mitochondrion	72.4	60.84
HORVU4Hr1G053550.2	Barley	mitochondrion	71.79	59.95
GSMUA_Achr8P01340_001	Banana	cytosol	25.49	44.13
GSMUA_Achr10P...	Banana	cytosol	30.02	40.04
GSMUA_Achr2P09160_001	Banana	cytosol	25.34	30.71
GSMUA_Achr8P15350_001	Banana	plastid	27.3	30.52
GSMUA_Achr1P13820_001	Banana	mitochondrion	24.28	29.7
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	27.0	29.54
GSMUA_Achr6P29700_001	Banana	plastid	25.19	28.89
GSMUA_Achr3P01410_001	Banana	nucleus	22.47	28.27
GSMUA_Achr11P...	Banana	nucleus	23.08	26.52
GSMUA_Achr9P25390_001	Banana	mitochondrion	17.5	25.89
GSMUA_Achr4P17320_001	Banana	plastid	19.46	25.29
GSMUA_Achr5P06030_001	Banana	nucleus	24.13	22.25
GSMUA_Achr8P31890_001	Banana	nucleus	25.79	21.76
GSMUA_Achr10P...	Banana	cytosol	31.37	20.78
GSMUA_Achr1P15980_001	Banana	cytosol	27.0	16.95

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G24870_001
EnsemblPlants:GSMUA_Achr1P24870_001	EnsemblPlants:GSMUA_Achr1T24870_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0S2U4	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00029699DA	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 24 [Source:GMGC_GENE;Acc:GSMUA_Achr1G24870_001]

Coordinates

chr1:+:19303765..19308146

Molecular Weight (calculated)

71973.6 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.425

Length

663 amino acids

Sequence
(BLAST)

001: MSKRKFGFEG FGVNRPATYN FERTSAPQRL YVPPSSRGGG HDNHEDADLD NIDYDQPDFP ERSSPAGDDG EIDPLDAFME GIQEEIRAPP PASDTGLTLA
101: SEALHAGYDS DEEVYAAAKA VDLALDHGTI DYEPFNKDFY EEQPSISGMN EQEVEEYRKG LAIRVSGFDV PKPIKLFEEC GFSPALMGAI TKQGYEKPTT
201: IQCQALPIVL SGRDVIGIAK TGSGKTAAFV LPMIVHIMDQ PELDKGEGPI GVICAPTREL AHQIYLEAKK FAKPYGIRVG AVYGGVSKLD QFKELKAGCE
301: VVVATPGRLI DLLKMKALTM LRATYLVLDE ADRMFDLGFE PQIRSIVGQI RPDRQTLLFS ATMPYKVERL AREILSDPKM PWLLEKLPGM IDDGDVLVFA
401: SKKGTASRMD ILQKFKSGIY HVLVATDVAA RGLDIKSIKS VVNFDIARDM DMHVHRIGRT GRAGDKDGTA YTLITHKEAR FAGELVNSLI AAGQDVPAEL
501: MDLAMKDGRF RAKRDARKGS GGKKGGRRGK GGNGSGRGVR GVDFGLGIGY NPDTANAATS HSVPSRSAAV NSLRTGMMAQ FKSNFVAASS NSEGNTSSTT
601: RPSLSGFVSG GSIGGEAYKA QSLTTFIPAT KNEGSRIENG NQKNSESVRD RPRERKRPSG WDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.