Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G181800.1 | Wheat | nucleus | 98.44 | 98.56 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 98.17 | 95.44 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 97.65 | 94.33 |
| Os03t0308500-01 | Rice | mitochondrion | 90.09 | 89.74 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 87.61 | 87.73 |
| Zm00001d047633_P002 | Maize | nucleus | 86.44 | 86.33 |
| Zm00001d028898_P011 | Maize | cytosol | 86.31 | 85.97 |
| CDX83333 | Canola | nucleus | 62.19 | 74.88 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 66.23 | 73.2 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 62.71 | 72.55 |
| VIT_07s0005g01600.t01 | Wine grape | cytosol | 72.75 | 72.37 |
| KRG96540 | Soybean | cytosol, mitochondrion | 72.36 | 72.27 |
| CDX80096 | Canola | cytosol | 67.67 | 71.29 |
| Bra000447.1-P | Field mustard | cytosol | 62.32 | 71.03 |
| Bra004464.1-P | Field mustard | cytosol | 67.67 | 70.9 |
| CDX95719 | Canola | cytosol | 67.93 | 70.88 |
| CDY37796 | Canola | cytosol | 67.8 | 70.84 |
| KRH68277 | Soybean | nucleus | 72.1 | 70.72 |
| AT2G47330.1 | Thale cress | cytosol | 69.75 | 70.39 |
| PGSC0003DMT400023277 | Potato | cytosol | 70.66 | 70.03 |
| Solyc01g079330.2.1 | Tomato | nucleus | 70.14 | 69.51 |
| TraesCS3A01G103700.1 | Wheat | cytosol | 27.9 | 43.15 |
| TraesCS3A01G416900.1 | Wheat | cytosol | 28.16 | 37.63 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 22.56 | 32.34 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 24.51 | 32.25 |
| TraesCS5A01G454600.1 | Wheat | golgi | 25.95 | 31.29 |
| TraesCS4A01G141400.1 | Wheat | plastid | 25.81 | 30.18 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 25.55 | 29.79 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 24.51 | 28.92 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 23.47 | 27.95 |
| TraesCS7A01G374000.1 | Wheat | nucleus | 24.38 | 26.45 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 25.03 | 26.41 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 35.46 | 25.37 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 23.86 | 23.37 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 26.21 | 15.07 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF531 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS4A01G121700 | EnsemblPlants:TraesCS4A01G121700.1 | TIGR:cd00079 |
| TIGR:cd00268 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:150650760..150654272
Molecular Weight (calculated)
82689.4 Da
IEP (calculated)
5.561
GRAVY (calculated)
-0.425
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKRPRLEGF SIPRPTSYSF ERSQPAPRLY VPADDDLDDI AFSDDAAAPS DAAEGGKAED DEIDPLDAFM AEIQEEIRAP PPPPKPEALR PADSDEDDDP
101: MESFLRAKKD AGLTLAADVM NAGYNSDEEV YAAAKAVDAG MMEYDSDDNP IVVDKRKIEP IPPLDHSTIE YEPFTKDFYE EKPSVSGMSV EEVADYMKSL
201: AIRVSGFDVP RPVKSFEDCG FPVPLMNAIA KQGYEKPTTI QCQALPIVLS GRDIIGIAKT GSGKTAAFVL PMIVHIMDQP ELQKEEGPIG VICAPTRELA
301: HQIYLEAKKF AKPYNLQVAA VYGGVSKFEQ FKELKSGCEI VVATPGRLID LLKMKALRMF RATYLVLDEA DRMFDLGFEP QIRSIVGQIR PDRQTLLFSA
401: TMPYKVERLA REILTDPIRV TVGQVGSANE DIKQVVNVLP SDAEKMPWLL EKMPGMIDDG DVLVFATKKA RVDEVENQLN QHGFKVAALH GDKDQASRME
501: TLQKFKSGIY HVLVATDVAA RGLDIKSIKT VVNFDIAKEM DMHIHRIGRT GRAGDKDGTA YTLITQKESR FAGELVHSLI AAGQDVPNEL MDLAMKDGRF
601: RANRDSRKGG KKGGKGKGGG GGGGGGGGGG GGARGRGRGI RGVDFGLGIG YGSESGPQVP APRSATVNTL KTGMMQNFKS SFVSASSSAP SNSAPLRGAP
701: FVKPALRGFV SGGTIGGDSG AARPAPPAPS VVPASSPAGN TNENGNTNPE SSRDQRRERK RPSGWDR
101: MESFLRAKKD AGLTLAADVM NAGYNSDEEV YAAAKAVDAG MMEYDSDDNP IVVDKRKIEP IPPLDHSTIE YEPFTKDFYE EKPSVSGMSV EEVADYMKSL
201: AIRVSGFDVP RPVKSFEDCG FPVPLMNAIA KQGYEKPTTI QCQALPIVLS GRDIIGIAKT GSGKTAAFVL PMIVHIMDQP ELQKEEGPIG VICAPTRELA
301: HQIYLEAKKF AKPYNLQVAA VYGGVSKFEQ FKELKSGCEI VVATPGRLID LLKMKALRMF RATYLVLDEA DRMFDLGFEP QIRSIVGQIR PDRQTLLFSA
401: TMPYKVERLA REILTDPIRV TVGQVGSANE DIKQVVNVLP SDAEKMPWLL EKMPGMIDDG DVLVFATKKA RVDEVENQLN QHGFKVAALH GDKDQASRME
501: TLQKFKSGIY HVLVATDVAA RGLDIKSIKT VVNFDIAKEM DMHIHRIGRT GRAGDKDGTA YTLITQKESR FAGELVHSLI AAGQDVPNEL MDLAMKDGRF
601: RANRDSRKGG KKGGKGKGGG GGGGGGGGGG GGARGRGRGI RGVDFGLGIG YGSESGPQVP APRSATVNTL KTGMMQNFKS SFVSASSSAP SNSAPLRGAP
701: FVKPALRGFV SGGTIGGDSG AARPAPPAPS VVPASSPAGN TNENGNTNPE SSRDQRRERK RPSGWDR
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
Arabidopsis Description
RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.