Factsheet for TraesCS4B01G181800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G121700.1	Wheat	mitochondrion	98.56	98.44
TraesCS4D01G184200.1	Wheat	mitochondrion	98.56	95.69
HORVU4Hr1G053550.2	Barley	mitochondrion	97.26	93.83
Os03t0308500-01	Rice	mitochondrion	89.82	89.35
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	87.47	87.47
Zm00001d047633_P002	Maize	nucleus	86.29	86.07
Zm00001d028898_P011	Maize	cytosol	86.16	85.71
CDX83333	Canola	nucleus	62.01	74.57
GSMUA_Achr1P13000_001	Banana	cytosol	66.19	73.05
GSMUA_Achr1P24870_001	Banana	cytosol	62.66	72.4
KRG96540	Soybean	cytosol, mitochondrion	72.32	72.14
VIT_07s0005g01600.t01	Wine grape	cytosol	72.58	72.11
CDX80096	Canola	cytosol	67.23	70.74
Bra000447.1-P	Field mustard	cytosol	62.14	70.73
KRH68277	Soybean	nucleus	71.93	70.46
Bra004464.1-P	Field mustard	cytosol	67.23	70.36
CDX95719	Canola	cytosol	67.49	70.34
CDY37796	Canola	cytosol	67.36	70.3
PGSC0003DMT400023277	Potato	cytosol	70.76	70.03
AT2G47330.1	Thale cress	cytosol	69.45	70.0
Solyc01g079330.2.1	Tomato	nucleus	70.23	69.51
TraesCS3B01G121100.1	Wheat	cytosol	27.68	43.44
TraesCS3B01G451900.1	Wheat	cytosol	27.94	37.28
TraesCS1B01G445500.1	Wheat	cytosol	20.89	35.01
TraesCS4B01G126000.1	Wheat	cytosol, plastid	25.98	33.11
TraesCS5B01G120500.1	Wheat	nucleus	22.58	32.58
TraesCS3B01G141300.1	Wheat	cytosol	25.46	31.76
TraesCS5B01G464500.2	Wheat	cytosol	25.98	31.39
TraesCS5B01G152200.1	Wheat	cytosol	24.54	30.87
TraesCS3B01G149300.8	Wheat	cytosol	24.54	28.92
TraesCS6B01G364400.1	Wheat	nucleus, plastid	22.98	27.12
TraesCS6B01G364300.1	Wheat	nucleus, plastid	22.85	26.96
TraesCS4B01G043900.1	Wheat	nucleus	25.2	26.47
TraesCS5B01G079300.1	Wheat	nucleus	24.67	26.29
TraesCS2B01G170700.1	Wheat	nucleus	34.07	25.66
TraesCS7B01G187000.1	Wheat	nucleus	35.25	25.4
TraesCS3B01G230800.1	Wheat	nucleus	23.89	23.31
TraesCS3B01G208800.1	Wheat	cytosol	16.58	20.58
TraesCS3B01G193400.3	Wheat	cytosol	16.71	19.13
TraesCS3B01G117000.1	Wheat	cytosol	26.24	14.92

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4B01G181800	EnsemblPlants:TraesCS4B01G181800.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:398786214..398789553

Molecular Weight (calculated)

82734.5 Da

IEP (calculated)

5.687

GRAVY (calculated)

-0.430

Length

766 amino acids

Sequence
(BLAST)

001: MSKRPRLEGF SIPRPTPYSF ERSQPAPRLY VPADDDLDDI AFSDDAAAPS DAAEGGKAED DEIDPLDAFM AEIQEEIRAP PPPPKPEALR PADSDEDDDP
101: MESFLRAKKD AGLTLAADVM NAGYNSDEEV YAAAKAVDAG MMEYDSDDNS IVVDKRKIEP IPPLDHSTIE YEPFTKDFYE EKPSVSGMSV EEVSDYMKSL
201: AIRVSGFDVP RPVKNFEDCG FPVPLMNAIA KQGYEKPTTI QCQALPIVLS GRDIIGIAKT GSGKTAAFVL PMIVHIMDQP ELQKEEGPIG VICAPTRELA
301: HQIYLEAKKF AKPYNLQVAA VYGGVSKFEQ FKELKSGCEI VVATPGRLID LLKMKALKMF RATYLVLDEA DRMFDLGFEP QIRSIVGQIR PDRQTLLFSA
401: TMPYKVERLA REILTDPIRV TVGQVGSANE DIKQVVNVLP SDAEKMPWLL EKMPGMIDDG DVLVFATKKA RVDEVENQLN QHGFKVAALH GDKDQASRME
501: TLQKFKSGIY HVLVATDVAA RGLDIKSIKT VVNFDIAKEM DMHIHRIGRT GRAGDKDGTA YTLITQKESR FAGELVHSLI AAGQDVPNEL MDLAMKDGRF
601: RANRDSRKGG KKGGKGKSGG GGGGGGGGGG GARGRGRGIR GVDFGLGIGY GSESGPQVPA PRSATVNVLK TGMMQNFKSS FVSASSSAPG NSAPLRGAPF
701: VKPALRGFVS GGTIGGDSGA ARPAPPAPSF VPASRPAGNT NENGNTNPES SKDQRRERKR PSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.