Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G100900.1 | Wheat | cytosol | 95.55 | 97.21 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 96.14 | 97.08 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 94.21 | 91.82 |
| OQU84042 | Sorghum | cytosol | 73.2 | 71.04 |
| Zm00001d007719_P010 | Maize | cytosol | 70.16 | 69.84 |
| Zm00001d048632_P001 | Maize | cytosol | 71.12 | 69.32 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 26.65 | 55.23 |
| CDX74101 | Canola | cytosol | 32.96 | 50.68 |
| KRH36905 | Soybean | nucleus | 43.65 | 50.47 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 43.13 | 50.39 |
| CDY08048 | Canola | nucleus | 32.89 | 50.34 |
| KRH11875 | Soybean | endoplasmic reticulum | 43.88 | 49.21 |
| Bra001200.1-P | Field mustard | cytosol | 38.38 | 49.14 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 38.46 | 49.05 |
| AT3G06480.1 | Thale cress | cytosol | 38.98 | 48.25 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 27.84 | 47.77 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 17.07 | 47.13 |
| Solyc01g057760.2.1 | Tomato | nucleus | 41.43 | 45.7 |
| TraesCS3B01G451900.1 | Wheat | cytosol | 18.86 | 44.25 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 13.81 | 35.03 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 11.88 | 35.01 |
| TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 15.44 | 34.61 |
| TraesCS5B01G464500.2 | Wheat | cytosol | 15.96 | 33.91 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 12.69 | 27.85 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 12.55 | 27.75 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 12.84 | 26.66 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 12.77 | 26.5 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 14.92 | 26.24 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 13.36 | 25.03 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 13.29 | 24.55 |
| TraesCS3B01G208800.1 | Wheat | cytosol | 11.14 | 24.31 |
| TraesCS3B01G193400.3 | Wheat | cytosol | 11.88 | 23.92 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 14.77 | 19.57 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 15.37 | 19.47 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3B01G117000 | EnsemblPlants:TraesCS3B01G117000.1 | InterPro:WW_dom |
| InterPro:WW_dom_sf | TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:-:83905765..83911735
Molecular Weight (calculated)
144218.0 Da
IEP (calculated)
10.002
GRAVY (calculated)
-0.817
Length
1347 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGAEAAADS SGPRFAPDDP TLPAPWKALI DGETLYYWNP ETNLTQYDKP GAAAPPVPAA APAPAPGAFA QPGMQQQQQP QQQQTAQQPP FQYQGQQAQQ
0101: LQFQYQQQQQ QQQQQEQMPN QQGSQQPLAP QYPNAHQQPM PYQHGHYMQP QQQYSYQVGQ QQQMPQTQYN QGQQMPIPQA ANQGQQPTMP PGAYNQGQRP
0201: PMPQAAYSHG QRPPMPQSAY NQGQQPQMPH ASYNQGQQLQ GTRMPHTQVQ HAQQSPGFHQ PAQASQGLQA SQPQVPQMSP QQGQLQHGFQ FTPQQGKQPH
0301: HGHLVTQHGQ QNTTAKVDAG AHPEGKQTGF SLPLSQQHGQ VPLSNQTLPS SHQRPEAHNQ VNIHGVGGPP YPAKHHLGGS SPGETNNVSF LSAPAQTHQG
0401: GVDTNYRQQL ASSHVVPNHI APSPGRPPMG FKRGNSEDQF EKNEPLSSGR FDGINALHQQ PKLAALPPSQ NHLRDMRNGP PYSQPDNFGG YNMAPPHLVQ
0501: NPLNNGPFPI GALTRPPSGT FSPPDFPSVA SVDAYRQHHE VTAVGENVPP PFMTFEATGF PPEILSEVHA AGFLNPTPIQ AQTWPVALQS RDIVAIAKTG
0601: SGKTLGYLIP AFVHLRRCQN NPMSGPTVLV LAPTRELASQ IQDEAIKFGR SSRVSCTCLY GGAPKGPQLR ELERGADIVV ATPGRLNDIL EMRKISLRQI
0701: SLLVLDEADR MLDMGFEPQI RKIVDEIPRN RQTLMYTATW PKEVTKIAGD LLRNPVQINI GSIDELVANK SITQYVEMVP PMDKQRRLEQ ILRAEERGSK
0801: IIIFCSTKKM CDQLARSIGR SFGAASIHGD KSQGERDHIL GQFRAGIVPV LVATDVAARG LDIKDIRVVI NYDFPTGIED YVHRIGRTGR AGATGVAYTF
0901: FSEQDWKYAA DLVKVLDGTG QQVPPELQQM AARGASGAPR NQAGGMSRWD GPGGGSRFES AVGGPGGYGG IREGPGGFGG RDGPGGFVDR DGPGRFGDRD
1001: GPGRFGGRET PDGFGGRDGP GGFDGRMGPG PGGFGGREGP GGFGGREGPG GFGGREGPGG FGGREGPGPS GFSGRGGRGS DGFGRRGGAS PGRFGGHGGR
1101: GDSPGFGGRG RGDSSGFGGR GRGDFSGGRG GRGRGFGGRG CSDRGPHDRF ISDGRGRYDG RRGFDKGRGS SYSRSPDRSR SRGYDRRSDS RSLSSRSRSR
1201: SRSWSRSRSR SRSWSRSCSR SRSRSRSRDQ GPVERRPRVR SGFDVLPPAT EAGAAVTGPL PVPLPGSVSD GTAPIPRQSL ADASDMSPMS PGGLVHVQEG
1301: APFMGGNDAN ISSRQADQPS QATDLAIPPS FSAAANFPGP AVQQDAP
0101: LQFQYQQQQQ QQQQQEQMPN QQGSQQPLAP QYPNAHQQPM PYQHGHYMQP QQQYSYQVGQ QQQMPQTQYN QGQQMPIPQA ANQGQQPTMP PGAYNQGQRP
0201: PMPQAAYSHG QRPPMPQSAY NQGQQPQMPH ASYNQGQQLQ GTRMPHTQVQ HAQQSPGFHQ PAQASQGLQA SQPQVPQMSP QQGQLQHGFQ FTPQQGKQPH
0301: HGHLVTQHGQ QNTTAKVDAG AHPEGKQTGF SLPLSQQHGQ VPLSNQTLPS SHQRPEAHNQ VNIHGVGGPP YPAKHHLGGS SPGETNNVSF LSAPAQTHQG
0401: GVDTNYRQQL ASSHVVPNHI APSPGRPPMG FKRGNSEDQF EKNEPLSSGR FDGINALHQQ PKLAALPPSQ NHLRDMRNGP PYSQPDNFGG YNMAPPHLVQ
0501: NPLNNGPFPI GALTRPPSGT FSPPDFPSVA SVDAYRQHHE VTAVGENVPP PFMTFEATGF PPEILSEVHA AGFLNPTPIQ AQTWPVALQS RDIVAIAKTG
0601: SGKTLGYLIP AFVHLRRCQN NPMSGPTVLV LAPTRELASQ IQDEAIKFGR SSRVSCTCLY GGAPKGPQLR ELERGADIVV ATPGRLNDIL EMRKISLRQI
0701: SLLVLDEADR MLDMGFEPQI RKIVDEIPRN RQTLMYTATW PKEVTKIAGD LLRNPVQINI GSIDELVANK SITQYVEMVP PMDKQRRLEQ ILRAEERGSK
0801: IIIFCSTKKM CDQLARSIGR SFGAASIHGD KSQGERDHIL GQFRAGIVPV LVATDVAARG LDIKDIRVVI NYDFPTGIED YVHRIGRTGR AGATGVAYTF
0901: FSEQDWKYAA DLVKVLDGTG QQVPPELQQM AARGASGAPR NQAGGMSRWD GPGGGSRFES AVGGPGGYGG IREGPGGFGG RDGPGGFVDR DGPGRFGDRD
1001: GPGRFGGRET PDGFGGRDGP GGFDGRMGPG PGGFGGREGP GGFGGREGPG GFGGREGPGG FGGREGPGPS GFSGRGGRGS DGFGRRGGAS PGRFGGHGGR
1101: GDSPGFGGRG RGDSSGFGGR GRGDFSGGRG GRGRGFGGRG CSDRGPHDRF ISDGRGRYDG RRGFDKGRGS SYSRSPDRSR SRGYDRRSDS RSLSSRSRSR
1201: SRSWSRSRSR SRSWSRSCSR SRSRSRSRDQ GPVERRPRVR SGFDVLPPAT EAGAAVTGPL PVPLPGSVSD GTAPIPRQSL ADASDMSPMS PGGLVHVQEG
1301: APFMGGNDAN ISSRQADQPS QATDLAIPPS FSAAANFPGP AVQQDAP
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.