Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G208800.1 | Wheat | cytosol | 87.44 | 94.81 |
| TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 30.19 | 33.61 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 22.27 | 30.53 |
| TraesCS5B01G464500.2 | Wheat | cytosol | 28.7 | 30.28 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 19.28 | 28.23 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 19.73 | 24.86 |
| TraesCS3B01G451900.1 | Wheat | cytosol | 20.78 | 24.22 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 23.17 | 23.85 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 20.78 | 21.42 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 20.78 | 21.42 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 19.43 | 21.17 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 18.83 | 20.69 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 21.08 | 19.61 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 21.23 | 19.48 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 22.27 | 18.98 |
| Os08t0154225-00 | Rice | cytosol | 16.14 | 18.15 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 19.13 | 16.71 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 23.92 | 15.05 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 22.87 | 15.04 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 23.92 | 11.88 |
| Os08t0154200-01 | Rice | cytosol, nucleus | 3.14 | 9.81 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF3615 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF12274 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF363 | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3B01G193400 | EnsemblPlants:TraesCS3B01G193400.3 | TIGR:cd00079 |
Description
No Description!
Coordinates
chr3B:+:212294554..212300081
Molecular Weight (calculated)
75009.1 Da
IEP (calculated)
6.061
GRAVY (calculated)
-0.202
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWHGVLPDE EDRIDLPLYI SPATPPYISP ATLLFKVRAY EMAAPDSICV HHLVARPAGG EHAKGLAELK IVEGAIGNLS REALPGPVYG FQELGLAEAV
101: LHNLARCQFE TPSPLQCYSI PMVLAGRDLL VCAQKGSGKT TALLIPVLSG LVTAPVAAGR TGRMKCVKPR ALLLVPTARL VKQIGADIRK FSYRTRIRVH
201: SKMKGKMQKC QLEAGIDIVV STPRRLINMV RTTQVSLEAI KYLVICELGL MLDMGFEKTL RKIVDDMHIP PKSARHTLLS SGTFQPAVQK LAWDFLSDYL
301: FITDGRLEFS IGLTKQKIEL ASEEEKRGLL LNLLQKQSVS SAGMQSQLRT VVFVETKGKA DSLKNWLCNE GFPATVIFAD SSQQERESAS LPFQISGISI
401: LIAANAASPG LDVANVDHLI NYDLPKSVEE YVERIRTFAR VGSATSFFTE SNRSIAKGLL ELMIEANLEV PDWLLDYANP DYTRSVELDS EDEENDKDRY
501: DLARSLASRK IDNIYDLACV WAELNCRRTK QSFDDSRIKT MSKDCCIAFT QQEEYKFLKF YFVKVTQHCY SPESYEKTYW HYNFIAKIKS KSGIWTEGIY
601: FAERKLECDV ETFCCSFLEP SDDGECYGCQ HGEAKVRHPT RGDYERGTPD HVWLSDGDCE ISDDDMVDF
101: LHNLARCQFE TPSPLQCYSI PMVLAGRDLL VCAQKGSGKT TALLIPVLSG LVTAPVAAGR TGRMKCVKPR ALLLVPTARL VKQIGADIRK FSYRTRIRVH
201: SKMKGKMQKC QLEAGIDIVV STPRRLINMV RTTQVSLEAI KYLVICELGL MLDMGFEKTL RKIVDDMHIP PKSARHTLLS SGTFQPAVQK LAWDFLSDYL
301: FITDGRLEFS IGLTKQKIEL ASEEEKRGLL LNLLQKQSVS SAGMQSQLRT VVFVETKGKA DSLKNWLCNE GFPATVIFAD SSQQERESAS LPFQISGISI
401: LIAANAASPG LDVANVDHLI NYDLPKSVEE YVERIRTFAR VGSATSFFTE SNRSIAKGLL ELMIEANLEV PDWLLDYANP DYTRSVELDS EDEENDKDRY
501: DLARSLASRK IDNIYDLACV WAELNCRRTK QSFDDSRIKT MSKDCCIAFT QQEEYKFLKF YFVKVTQHCY SPESYEKTYW HYNFIAKIKS KSGIWTEGIY
601: FAERKLECDV ETFCCSFLEP SDDGECYGCQ HGEAKVRHPT RGDYERGTPD HVWLSDGDCE ISDDDMVDF
001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
Arabidopsis Description
RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.