Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G298800.3 | Wheat | nucleus | 98.78 | 97.95 |
TraesCS7D01G294500.1 | Wheat | nucleus | 94.26 | 97.57 |
HORVU0Hr1G020490.1 | Barley | nucleus | 95.2 | 94.93 |
Zm00001d024533_P001 | Maize | nucleus | 81.94 | 81.78 |
Os08t0159900-01 | Rice | extracellular, nucleus | 79.77 | 80.84 |
TraesCS2B01G170700.1 | Wheat | nucleus | 71.59 | 74.83 |
CDY72529 | Canola | cytosol | 41.77 | 71.27 |
OQU79814 | Sorghum | nucleus | 65.66 | 70.72 |
AT3G09620.2 | Thale cress | nucleus | 56.44 | 60.61 |
CDY44720 | Canola | nucleus | 49.01 | 60.3 |
KRH77709 | Soybean | nucleus | 62.56 | 60.24 |
KRH27757 | Soybean | nucleus | 62.37 | 59.89 |
PGSC0003DMT400011665 | Potato | nucleus | 62.65 | 59.73 |
VIT_03s0038g04130.t01 | Wine grape | nucleus | 64.44 | 59.72 |
Bra029779.1-P | Field mustard | nucleus | 49.2 | 58.96 |
Solyc12g098700.1.1 | Tomato | nucleus | 63.31 | 58.67 |
CDY41597 | Canola | nucleus | 41.86 | 57.57 |
CDY31513 | Canola | nucleus | 59.36 | 57.05 |
AT1G20920.3 | Thale cress | nucleus | 62.28 | 56.78 |
Bra025856.1-P | Field mustard | nucleus | 62.18 | 56.45 |
GSMUA_Achr10P... | Banana | cytosol | 52.68 | 55.94 |
TraesCS3B01G121100.1 | Wheat | cytosol | 19.66 | 42.83 |
TraesCS3B01G451900.1 | Wheat | cytosol | 20.32 | 37.63 |
TraesCS4B01G181800.1 | Wheat | nucleus | 25.4 | 35.25 |
TraesCS5B01G120500.1 | Wheat | nucleus | 17.22 | 34.46 |
TraesCS1B01G445500.1 | Wheat | cytosol | 14.77 | 34.35 |
TraesCS3B01G141300.1 | Wheat | cytosol | 17.59 | 30.46 |
TraesCS3B01G149300.8 | Wheat | cytosol | 18.53 | 30.31 |
TraesCS5B01G464500.2 | Wheat | cytosol | 18.06 | 30.28 |
TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 17.12 | 30.28 |
TraesCS5B01G152200.1 | Wheat | cytosol | 17.22 | 30.05 |
TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 17.87 | 29.28 |
TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 17.78 | 29.12 |
TraesCS5B01G079300.1 | Wheat | nucleus | 19.38 | 28.65 |
TraesCS4B01G043900.1 | Wheat | nucleus | 19.57 | 28.53 |
TraesCS3B01G208800.1 | Wheat | cytosol | 14.3 | 24.64 |
TraesCS3B01G193400.3 | Wheat | cytosol | 15.05 | 23.92 |
TraesCS3B01G230800.1 | Wheat | nucleus | 16.84 | 22.8 |
TraesCS3B01G117000.1 | Wheat | cytosol | 19.47 | 15.37 |
Protein Annotations
MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS |
InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS7B01G187000 | EnsemblPlants:TraesCS7B01G187000.1 |
TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7B:+:312813014..312816950
Molecular Weight (calculated)
120483.0 Da
IEP (calculated)
5.759
GRAVY (calculated)
-0.906
Length
1063 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGDDDRIT VSKHHHRDKD KDRDHSSSRR HRDKDRPSSR HHRDDRDGER ERDRDRDRHH RDKERDREER KARERAEKER EKEEKRERER EEREMEKERE
0101: RARRREERDR EKEKSRRREA VDEEENEDRD RDRKRRRRSL HRHHHRDVEP EETPLTREEE EDAEEVERRR QKEEDMEAEQ QRLDDEMERR RRRVKEWQEK
0201: KRREQQQEDG TSGGAAAIEA DGGGKSGKKW TLDGEESDEE DVKKLEENAG TGAMDVDLPN MDNGSNGGAG LEEDEIDPLD AFMDSMVLPV VAKLESAATA
0301: MESVLADNAG CLNDKSVKDA TSNEDKKRQM MAIGRIMQGD DSDSDYDDAN NGEAGSDDED DAEFIKRVKK TKAEKLVIVD HSKIDYQPFR KNFYIEVKDI
0401: KNMPAEEAAA YRKLLELKVH GKDVPKPIKT WIQSGLTSKL LDTIKKLGFE KPMPIQAQAL PVIMSGRDCI GVAKTGSGKT LAFVLPMLRH VKDQPPVVPG
0501: DGPIGLIMAP TRELVVQIYS DIKKFSKVLG INCVPIYGGS GVAQQISELK RGAEIVVCTP GRMIDILCTS SGKITNLRRV TFLVLDEADR MFDMGFEPQI
0601: TRIVQNTRPD RQTVLFSATF PRQVEILARK VLTKPVEIQM GGRSVVNKDI TQLVEVRPES ERFFRLLELL GEWFANGKIL VFVQSQDKCD SLLKELFQHG
0701: YPCLSLHGGK DQNDRESTLA DFKSNVCSLL IATSVAARGL DVKDLELVVN YDVTNHYEDY VHRVGRTGRA GRKGCAVTFI SEEEERYAPD LVKALELSEQ
0801: AVPEDLKALA DRFMSKVKQG TEQAHGTGYG GSGFKFNEEE EEARKSAKRA QAREYGYEED KSDSDSDDEG GVRKQGGDVA AQAIAAAQAA AALAAARATS
0901: NAQQQVPATT AGSLLPLPVA PNQQNNEATQ RALDAAYNLQ KNLARIQAHA VPEHYEAELE INDFPQNARW KITHKETLVP IQEWTGAAIT TRGTFIPQGK
1001: IVGANERKLY LFIEGPNESS VKKAKAELKR VLEDCANQAL NLPAYRGLQI TIQLLDFRYA TIF
0101: RARRREERDR EKEKSRRREA VDEEENEDRD RDRKRRRRSL HRHHHRDVEP EETPLTREEE EDAEEVERRR QKEEDMEAEQ QRLDDEMERR RRRVKEWQEK
0201: KRREQQQEDG TSGGAAAIEA DGGGKSGKKW TLDGEESDEE DVKKLEENAG TGAMDVDLPN MDNGSNGGAG LEEDEIDPLD AFMDSMVLPV VAKLESAATA
0301: MESVLADNAG CLNDKSVKDA TSNEDKKRQM MAIGRIMQGD DSDSDYDDAN NGEAGSDDED DAEFIKRVKK TKAEKLVIVD HSKIDYQPFR KNFYIEVKDI
0401: KNMPAEEAAA YRKLLELKVH GKDVPKPIKT WIQSGLTSKL LDTIKKLGFE KPMPIQAQAL PVIMSGRDCI GVAKTGSGKT LAFVLPMLRH VKDQPPVVPG
0501: DGPIGLIMAP TRELVVQIYS DIKKFSKVLG INCVPIYGGS GVAQQISELK RGAEIVVCTP GRMIDILCTS SGKITNLRRV TFLVLDEADR MFDMGFEPQI
0601: TRIVQNTRPD RQTVLFSATF PRQVEILARK VLTKPVEIQM GGRSVVNKDI TQLVEVRPES ERFFRLLELL GEWFANGKIL VFVQSQDKCD SLLKELFQHG
0701: YPCLSLHGGK DQNDRESTLA DFKSNVCSLL IATSVAARGL DVKDLELVVN YDVTNHYEDY VHRVGRTGRA GRKGCAVTFI SEEEERYAPD LVKALELSEQ
0801: AVPEDLKALA DRFMSKVKQG TEQAHGTGYG GSGFKFNEEE EEARKSAKRA QAREYGYEED KSDSDSDDEG GVRKQGGDVA AQAIAAAQAA AALAAARATS
0901: NAQQQVPATT AGSLLPLPVA PNQQNNEATQ RALDAAYNLQ KNLARIQAHA VPEHYEAELE INDFPQNARW KITHKETLVP IQEWTGAAIT TRGTFIPQGK
1001: IVGANERKLY LFIEGPNESS VKKAKAELKR VLEDCANQAL NLPAYRGLQI TIQLLDFRYA TIF
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.