Factsheet for TraesCS3B01G141300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G022710.1	Barley	mitochondrion	98.53	94.83
Os02t0150100-02	Rice	cytosol	70.85	94.57
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	99.02	92.4
TraesCS5B01G152200.1	Wheat	cytosol	87.3	88.01
Zm00001d047502_P001	Maize	extracellular	85.67	85.11
EER92293	Sorghum	cytosol	85.67	85.11
CDY61276	Canola	cytosol	68.57	81.12
CDY39973	Canola	cytosol	68.4	81.08
CDX87315	Canola	cytosol	68.4	81.08
CDY38671	Canola	cytosol	68.4	80.92
KRH68534	Soybean	cytosol	75.9	79.39
VIT_09s0002g08120.t01	Wine grape	cytosol	75.9	79.39
KRG94409	Soybean	cytosol	75.9	79.25
Bra008471.1-P	Field mustard	cytosol	71.66	78.15
PGSC0003DMT400036663	Potato	cytosol	74.92	78.1
Bra018133.1-P	Field mustard	cytosol	74.59	77.89
GSMUA_Achr2P09160_001	Banana	cytosol	69.38	77.88
PGSC0003DMT400073340	Potato	cytosol	74.43	77.59
Bra035177.1-P	Field mustard	cytosol	73.94	77.21
Solyc03g117440.2.1	Tomato	cytosol, nucleus	74.76	77.14
Solyc06g068280.2.1	Tomato	extracellular, nucleus	74.43	76.81
AT5G51280.1	Thale cress	cytosol	73.62	76.48
CDX67949	Canola	cytosol	67.26	75.92
AT4G33370.1	Thale cress	cytosol	66.78	75.65
Bra003568.1-P	Field mustard	cytosol	71.34	74.11
GSMUA_Achr1P13820_001	Banana	mitochondrion	60.42	68.45
CDX79384	Canola	cytosol	42.83	67.44
TraesCS3B01G121100.1	Wheat	cytosol	27.69	34.84
TraesCS1B01G445500.1	Wheat	cytosol	25.57	34.35
TraesCS3B01G451900.1	Wheat	cytosol	27.69	29.62
TraesCS5B01G120500.1	Wheat	nucleus	25.57	29.57
TraesCS4B01G126000.1	Wheat	cytosol, plastid	27.52	28.12
TraesCS5B01G464500.2	Wheat	cytosol	27.36	26.5
TraesCS3B01G149300.8	Wheat	cytosol	27.85	26.31
TraesCS4B01G181800.1	Wheat	nucleus	31.76	25.46
TraesCS6B01G364400.1	Wheat	nucleus, plastid	26.38	24.96
TraesCS6B01G364300.1	Wheat	nucleus, plastid	26.22	24.81
TraesCS5B01G079300.1	Wheat	nucleus	27.85	23.78
TraesCS4B01G043900.1	Wheat	nucleus	27.69	23.32
TraesCS3B01G230800.1	Wheat	nucleus	26.87	21.02
TraesCS3B01G208800.1	Wheat	cytosol	20.2	20.1
TraesCS3B01G193400.3	Wheat	cytosol	21.17	19.43
TraesCS2B01G170700.1	Wheat	nucleus	30.13	18.19
TraesCS7B01G187000.1	Wheat	nucleus	30.46	17.59
TraesCS3B01G117000.1	Wheat	cytosol	27.85	12.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3B01G141300	EnsemblPlants:TraesCS3B01G141300.1	TIGR:cd00079	TIGR:cd00268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:127855383..127862509

Molecular Weight (calculated)

67879.7 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.226

Length

614 amino acids

Sequence
(BLAST)

001: MAPGAAVAAK SDDEDDYEEY IPVSKRRAME ADRLRHQRLS KPAAAASAGS LPPPPPPPTA NPAAAPDDAA PAAKPSLLVT STQLKRAAPE VTATEQIILQ
101: EKEMIDNLSN KNTLMSVREL AKGITYTEPL RTGWKPPLRL RRMPRNKADE LRRKWHILVE GDEIPPPARD FLDLRFPEPI LRMLREKGIV QPTPIQVQGL
201: PVVLSGRDMI GIAFTGSGKT LVFVLPLIMV ALQEEMLMPI VPGEGPFGMI ICPSRELAKQ TYDVIDMFLT PLKQAGFPEI RPLLCIGGID MRTQLDVVKK
301: GVHIVVATPG RLKDLLAKKK MNLDNCRYLT LDEADRLVDL GFEDDIREVF DHFKAQRQTL LFSATMPKKI QNFAKSALVK PVIVNVGRAG AANLDVIQEV
401: EYVKEDARII YLLECLQKTP PPVLIFCENK ADVDYIHEYL LLKGVEAVAI HGGKDQEERQ NAIEFFKNGK KDVLVATDVA SKGLDFPDIQ HVINYDMPAE
501: IENYVHRIGR TGRCGKTGIA TTFINKNQTE TTLLDLKHLL KEAKQRIPPV LAELVDPLED AEAIAKESGV KGCAFCGGLG HRLADCPKLE HQKSVAIAGS
601: RRDYYGGGGY RGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.