Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39973 | Canola | cytosol | 96.34 | 96.53 |
| CDY61276 | Canola | cytosol | 95.76 | 95.76 |
| CDX87315 | Canola | cytosol | 95.57 | 95.75 |
| Bra008471.1-P | Field mustard | cytosol | 99.04 | 91.3 |
| CDX67949 | Canola | cytosol | 89.79 | 85.66 |
| AT5G51280.1 | Thale cress | cytosol | 94.99 | 83.42 |
| AT4G33370.1 | Thale cress | cytosol | 86.9 | 83.21 |
| Os02t0150100-02 | Rice | cytosol | 71.1 | 80.22 |
| KRH68534 | Soybean | cytosol | 89.6 | 79.22 |
| KRG94409 | Soybean | cytosol | 89.6 | 79.08 |
| VIT_09s0002g08120.t01 | Wine grape | cytosol | 89.21 | 78.88 |
| PGSC0003DMT400036663 | Potato | cytosol | 88.63 | 78.1 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 88.63 | 77.31 |
| PGSC0003DMT400073340 | Potato | cytosol | 86.71 | 76.4 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 86.9 | 75.8 |
| CDX79384 | Canola | cytosol | 55.3 | 73.59 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 76.11 | 72.21 |
| HORVU5Hr1G048040.1 | Barley | plastid | 75.53 | 68.53 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 80.92 | 68.4 |
| Zm00001d047502_P001 | Maize | extracellular | 79.19 | 66.5 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 77.65 | 66.28 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 77.65 | 66.17 |
| EER92293 | Sorghum | cytosol | 78.61 | 66.02 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 80.73 | 65.67 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 73.41 | 65.35 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 66.86 | 64.02 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 81.12 | 63.98 |
| Os06t0697200-00 | Rice | cytosol | 74.57 | 62.52 |
| CDX84672 | Canola | cytosol | 29.67 | 34.45 |
| CDY47978 | Canola | plastid | 26.59 | 33.01 |
| CDY10596 | Canola | nucleus | 30.83 | 32.06 |
| CDY02459 | Canola | cytosol | 30.64 | 31.86 |
| CDX98304 | Canola | cytosol, plastid | 26.4 | 29.72 |
| CDY16735 | Canola | cytosol | 33.33 | 29.27 |
| CDY48128 | Canola | cytosol | 33.14 | 28.96 |
| CDY41747 | Canola | nucleus | 29.48 | 28.33 |
| CDX83333 | Canola | nucleus | 34.49 | 28.1 |
| CDY65864 | Canola | nucleus | 28.71 | 27.9 |
| CDY66221 | Canola | nucleus | 28.71 | 27.8 |
| CDY06034 | Canola | cytosol | 30.44 | 27.48 |
| CDY53786 | Canola | nucleus | 31.21 | 27.46 |
| CDX98301 | Canola | cytosol | 31.79 | 27.45 |
| CDX67749 | Canola | cytosol | 31.6 | 27.24 |
| CDX71948 | Canola | cytosol | 31.21 | 27.14 |
| CDY37696 | Canola | nucleus | 30.83 | 27.12 |
| CDY14843 | Canola | cytosol, plastid | 31.6 | 26.8 |
| CDY49232 | Canola | cytosol | 31.79 | 26.4 |
| CDY72529 | Canola | cytosol | 31.41 | 26.16 |
| CDX67752 | Canola | cytosol | 31.79 | 26.07 |
| CDX71944 | Canola | cytosol | 31.79 | 26.03 |
| CDY37796 | Canola | cytosol | 35.45 | 25.07 |
| CDX80096 | Canola | cytosol | 35.07 | 25.0 |
| CDX95719 | Canola | cytosol | 35.26 | 24.9 |
| CDX79541 | Canola | nucleus | 29.87 | 24.64 |
| CDX84112 | Canola | nucleus | 13.87 | 24.0 |
| CDY28671 | Canola | cytosol | 30.25 | 23.68 |
| CDX91943 | Canola | cytosol | 30.25 | 23.61 |
| CDX74304 | Canola | cytosol | 30.25 | 22.82 |
| CDX91036 | Canola | cytosol | 29.09 | 22.08 |
| CDX88990 | Canola | cytosol, plastid | 23.31 | 21.68 |
| CDX85591 | Canola | cytosol | 29.29 | 20.21 |
| CDY44720 | Canola | nucleus | 31.6 | 18.98 |
| CDY41597 | Canola | nucleus | 27.75 | 18.63 |
| CDX74101 | Canola | cytosol | 30.64 | 18.15 |
| CDY08048 | Canola | nucleus | 30.44 | 17.95 |
| CDY31513 | Canola | nucleus | 33.91 | 15.91 |
| CDY00570 | Canola | nucleus | 15.61 | 13.34 |
| CDX91039 | Canola | cytosol | 2.31 | 6.86 |
| CDX91037 | Canola | cytosol | 2.31 | 6.86 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HM41 | UniProt:A0A078HM41 | EnsemblPlants:CDY38671 | ProteinID:CDY38671 |
| ProteinID:CDY38671.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00066397001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR001878 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00098 |
| PFAM:PF00270 | PFAM:PF00271 | PFscan:PS50158 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF542 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00343 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | SUPFAM:SSF57756 | UniParc:UPI0004EEF898 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg |
Description
BnaC02g23080DBnaC02g23080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM41]
Coordinates
chrLK032429:-:173845..175906
Molecular Weight (calculated)
57959.9 Da
IEP (calculated)
8.014
GRAVY (calculated)
-0.242
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDDYVEY VPVAKRRAME EQKILQRKGK KEMMEHLSDK KTLMSVRELA KGITYTEPLL TGWKPPLHVR KMSRKQMDLI RKQWHIIVSG EEIPPPIKNF
101: KDMKFPRAVL DTLKEKGIVQ PTPIQVQGLP VILSGRDMIG IAFTGSGKTL VFVLPMIMIA LQEEEMMPIG PGEGPIGLIA GYPPLRSLLC IGGVDMRSQL
201: DVVKRGVHIV VATPGRLKDL LAKKKMSLDS CRYLTLDEAD RLVDLGFEDD IREVFDHFKS QRQTLLFSAT MPTKIQIFAR SALVKPVTVN VGRAGAANLD
301: VIQEVEYVKQ EAKIVYLLEC LQKTSPPVLI FCENKADVDD IHEYLLLKGV EAVAIHGGKD QEDREYAISS FKAGKKDVLV ATDIASKGLD FPDIQHVINY
401: DMPAEIENYV HRIGRTGRCG KTGIATTFIN KNQSETTLLD LKHLLQEAKQ RIPPVLAELK DPMEEAETIA NASGVKGCAY CGGLGHRIRD CPKLEHQKSV
501: AISNSRKDYF GSGGYRGEI
101: KDMKFPRAVL DTLKEKGIVQ PTPIQVQGLP VILSGRDMIG IAFTGSGKTL VFVLPMIMIA LQEEEMMPIG PGEGPIGLIA GYPPLRSLLC IGGVDMRSQL
201: DVVKRGVHIV VATPGRLKDL LAKKKMSLDS CRYLTLDEAD RLVDLGFEDD IREVFDHFKS QRQTLLFSAT MPTKIQIFAR SALVKPVTVN VGRAGAANLD
301: VIQEVEYVKQ EAKIVYLLEC LQKTSPPVLI FCENKADVDD IHEYLLLKGV EAVAIHGGKD QEDREYAISS FKAGKKDVLV ATDIASKGLD FPDIQHVINY
401: DMPAEIENYV HRIGRTGRCG KTGIATTFIN KNQSETTLLD LKHLLQEAKQ RIPPVLAELK DPMEEAETIA NASGVKGCAY CGGLGHRIRD CPKLEHQKSV
501: AISNSRKDYF GSGGYRGEI
001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
Arabidopsis Description
RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.