Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06034 | Canola | cytosol | 94.14 | 97.74 |
| Bra007399.1-P | Field mustard | cytosol | 97.82 | 95.58 |
| CDY47978 | Canola | plastid | 63.15 | 90.19 |
| CDX67749 | Canola | cytosol | 90.79 | 90.03 |
| CDX98301 | Canola | cytosol | 90.45 | 89.85 |
| AT3G58510.2 | Thale cress | cytosol | 87.27 | 85.13 |
| CDY14843 | Canola | cytosol, plastid | 83.58 | 81.54 |
| CDX98304 | Canola | cytosol, plastid | 60.13 | 77.87 |
| VIT_08s0007g07070.t01 | Wine grape | cytosol, plastid | 78.22 | 75.08 |
| CDX67752 | Canola | cytosol | 78.22 | 73.78 |
| CDY49232 | Canola | cytosol | 76.88 | 73.44 |
| Solyc03g052980.2.1 | Tomato | nucleus | 74.54 | 72.71 |
| CDX71944 | Canola | cytosol | 76.88 | 72.4 |
| PGSC0003DMT400002828 | Potato | cytosol | 74.71 | 72.17 |
| KRH38030 | Soybean | endoplasmic reticulum | 73.7 | 72.01 |
| KRH71800 | Soybean | plastid | 72.19 | 70.54 |
| TraesCS4D01G148700.1 | Wheat | golgi | 69.85 | 69.38 |
| TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 69.85 | 69.38 |
| HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 69.85 | 69.38 |
| Os11t0599500-00 | Rice | nucleus, plasma membrane | 71.36 | 68.38 |
| Zm00001d048924_P001 | Maize | plasma membrane | 69.18 | 67.93 |
| KXG28851 | Sorghum | cytosol, plastid | 69.85 | 66.72 |
| TraesCS4A01G141400.1 | Wheat | plastid | 70.02 | 63.72 |
| CDX88990 | Canola | cytosol, plastid | 48.58 | 51.97 |
| CDY00570 | Canola | nucleus | 40.7 | 40.03 |
| CDX84672 | Canola | cytosol | 29.31 | 39.15 |
| CDY02459 | Canola | cytosol | 29.48 | 35.27 |
| CDY10596 | Canola | nucleus | 29.48 | 35.27 |
| CDY16735 | Canola | cytosol | 33.5 | 33.84 |
| CDY48128 | Canola | cytosol | 33.67 | 33.84 |
| CDY41747 | Canola | nucleus | 29.65 | 32.78 |
| CDY65864 | Canola | nucleus | 29.15 | 32.58 |
| CDY66221 | Canola | nucleus | 28.98 | 32.28 |
| CDX87315 | Canola | cytosol | 27.14 | 31.27 |
| CDY61276 | Canola | cytosol | 27.14 | 31.21 |
| CDY38671 | Canola | cytosol | 27.14 | 31.21 |
| CDY39973 | Canola | cytosol | 26.97 | 31.08 |
| CDY53786 | Canola | nucleus | 30.65 | 31.02 |
| CDX67949 | Canola | cytosol | 27.81 | 30.51 |
| CDY37696 | Canola | nucleus | 29.98 | 30.34 |
| CDX83333 | Canola | nucleus | 32.33 | 30.3 |
| CDX91943 | Canola | cytosol | 33.17 | 29.77 |
| CDX91036 | Canola | cytosol | 34.0 | 29.68 |
| CDY28671 | Canola | cytosol | 32.83 | 29.56 |
| CDX84112 | Canola | nucleus | 14.57 | 29.0 |
| CDX74304 | Canola | cytosol | 33.0 | 28.63 |
| CDX80096 | Canola | cytosol | 33.67 | 27.61 |
| CDX79541 | Canola | nucleus | 28.98 | 27.5 |
| CDY37796 | Canola | cytosol | 33.67 | 27.38 |
| CDX95719 | Canola | cytosol | 33.67 | 27.35 |
| CDX85591 | Canola | cytosol | 34.0 | 26.99 |
| CDY72529 | Canola | cytosol | 27.64 | 26.48 |
| CDX79384 | Canola | cytosol | 14.91 | 22.82 |
| CDX74101 | Canola | cytosol | 33.17 | 22.6 |
| CDY08048 | Canola | nucleus | 33.17 | 22.5 |
| CDY44720 | Canola | nucleus | 29.82 | 20.6 |
| CDY41597 | Canola | nucleus | 24.96 | 19.28 |
| CDY31513 | Canola | nucleus | 30.49 | 16.46 |
| CDX91039 | Canola | cytosol | 2.85 | 9.71 |
| CDX91037 | Canola | cytosol | 2.85 | 9.71 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CAA4 | EnsemblPlants:CDX71948 | ProteinID:CDX71948 | ProteinID:CDX71948.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00155705001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF363 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE1AB0 | SEG:seg | : | : | : |
Description
BnaC08g29260D
Coordinates
chrLK031795:-:1439893..1442692
Molecular Weight (calculated)
64469.8 Da
IEP (calculated)
6.963
GRAVY (calculated)
-0.494
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSWADVAD SDNAASRAKP AYVPPHLRNR QSEPAAPFPG NDRGGYGGQP SRWAPGGGVG YRADAGRAGY GHGGRGTTGG GGGGGGWDRE VNPFGDDVDL
101: EPAFNDQENT GINFDAYEDI PIETSGGNVP PPVNTFAEID LGEALNLNIR RCKYVRPTPV QRHAIPILLA QRDLMACAQT GSGKTAAFCF PIISGILRDQ
201: NPQRPRGSRT VYPLAVILSP TRELASQIHD EAKKFSYQTG VKVVVAYGGT PINQQLRELE RGVDILVATP GRLNDLLERA RVSMQMIKFL ALDEADRMLD
301: MGFEPQIRKI VEEMDMPPRG MRQTMLFSAT FPSEIQRLAA DFLANYIFLA VGRVGSSTDL IAQRVEFVHE SDKKSHLMDL LHAQRETGNH DKQSLTLVFV
401: ETKRGADSLE NWLCMNDFPA TTIHGDRTQQ EREVALKSFK SGRTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGKS GVATAFFNEK
501: NAQLARQLAE LMQEANQEVP EWLTRYASRA SFGGGKKRSG GRFGGRDFRR EGSYGSRGGG SGGGGNDYYG GGGGYGGGGY GGAPSGGYGG QVTSAWD
101: EPAFNDQENT GINFDAYEDI PIETSGGNVP PPVNTFAEID LGEALNLNIR RCKYVRPTPV QRHAIPILLA QRDLMACAQT GSGKTAAFCF PIISGILRDQ
201: NPQRPRGSRT VYPLAVILSP TRELASQIHD EAKKFSYQTG VKVVVAYGGT PINQQLRELE RGVDILVATP GRLNDLLERA RVSMQMIKFL ALDEADRMLD
301: MGFEPQIRKI VEEMDMPPRG MRQTMLFSAT FPSEIQRLAA DFLANYIFLA VGRVGSSTDL IAQRVEFVHE SDKKSHLMDL LHAQRETGNH DKQSLTLVFV
401: ETKRGADSLE NWLCMNDFPA TTIHGDRTQQ EREVALKSFK SGRTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGKS GVATAFFNEK
501: NAQLARQLAE LMQEANQEVP EWLTRYASRA SFGGGKKRSG GRFGGRDFRR EGSYGSRGGG SGGGGNDYYG GGGGYGGGGY GGAPSGGYGG QVTSAWD
001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD
Arabidopsis Description
RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.