Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83333 | Canola | nucleus | 83.95 | 96.86 |
| CDX80096 | Canola | cytosol | 91.56 | 92.45 |
| CDY37796 | Canola | cytosol | 91.7 | 91.83 |
| AT2G47330.1 | Thale cress | cytosol | 87.62 | 84.74 |
| KRG96540 | Soybean | cytosol, mitochondrion | 77.69 | 74.35 |
| KRH68277 | Soybean | nucleus | 77.42 | 72.76 |
| PGSC0003DMT400023277 | Potato | cytosol | 75.51 | 71.71 |
| Solyc01g079330.2.1 | Tomato | nucleus | 75.1 | 71.32 |
| VIT_07s0005g01600.t01 | Wine grape | cytosol | 74.69 | 71.21 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 62.18 | 68.93 |
| TraesCS4A01G121700.1 | Wheat | mitochondrion | 70.88 | 67.93 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 70.75 | 67.89 |
| Zm00001d047633_P002 | Maize | nucleus | 70.88 | 67.84 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 70.34 | 67.49 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 63.54 | 67.29 |
| Os03t0308500-01 | Rice | mitochondrion | 70.07 | 66.88 |
| Zm00001d028898_P011 | Maize | cytosol | 69.25 | 66.1 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 70.88 | 66.03 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 70.2 | 64.99 |
| CDY10596 | Canola | nucleus | 28.84 | 42.48 |
| CDY47978 | Canola | plastid | 24.08 | 42.34 |
| CDY02459 | Canola | cytosol | 28.44 | 41.88 |
| CDX84672 | Canola | cytosol | 23.81 | 39.15 |
| CDY16735 | Canola | cytosol | 30.2 | 37.56 |
| CDY48128 | Canola | cytosol | 30.34 | 37.54 |
| CDX98304 | Canola | cytosol, plastid | 22.99 | 36.66 |
| CDY72529 | Canola | cytosol | 30.48 | 35.96 |
| CDX87315 | Canola | cytosol | 25.31 | 35.91 |
| CDY61276 | Canola | cytosol | 25.31 | 35.84 |
| CDY39973 | Canola | cytosol | 25.03 | 35.52 |
| CDY38671 | Canola | cytosol | 24.9 | 35.26 |
| CDX67749 | Canola | cytosol | 28.71 | 35.05 |
| CDY06034 | Canola | cytosol | 27.07 | 34.61 |
| CDX98301 | Canola | cytosol | 28.03 | 34.28 |
| CDY14843 | Canola | cytosol, plastid | 28.3 | 33.99 |
| CDX71948 | Canola | cytosol | 27.35 | 33.67 |
| CDX67949 | Canola | cytosol | 24.9 | 33.64 |
| CDY41747 | Canola | nucleus | 24.49 | 33.33 |
| CDY65864 | Canola | nucleus | 23.67 | 32.58 |
| CDY66221 | Canola | nucleus | 23.67 | 32.46 |
| CDX71944 | Canola | cytosol | 27.89 | 32.33 |
| CDY49232 | Canola | cytosol | 27.48 | 32.32 |
| CDX67752 | Canola | cytosol | 27.62 | 32.07 |
| CDY37696 | Canola | nucleus | 24.63 | 30.68 |
| CDY53786 | Canola | nucleus | 24.49 | 30.51 |
| CDY44720 | Canola | nucleus | 34.56 | 29.4 |
| CDX79384 | Canola | cytosol | 15.51 | 29.23 |
| CDX84112 | Canola | nucleus | 11.43 | 28.0 |
| CDY41597 | Canola | nucleus | 29.25 | 27.81 |
| CDX91943 | Canola | cytosol | 25.03 | 27.67 |
| CDX79541 | Canola | nucleus | 23.54 | 27.5 |
| CDY28671 | Canola | cytosol | 24.76 | 27.45 |
| CDX91036 | Canola | cytosol | 25.17 | 27.05 |
| CDX74304 | Canola | cytosol | 25.17 | 26.89 |
| CDX88990 | Canola | cytosol, plastid | 20.27 | 26.7 |
| CDX85591 | Canola | cytosol | 25.44 | 24.87 |
| CDY31513 | Canola | nucleus | 34.97 | 23.24 |
| CDX74101 | Canola | cytosol | 25.85 | 21.69 |
| CDY08048 | Canola | nucleus | 25.85 | 21.59 |
| CDY00570 | Canola | nucleus | 15.24 | 18.45 |
| CDX91037 | Canola | cytosol | 1.77 | 7.43 |
| CDX91039 | Canola | cytosol | 1.77 | 7.43 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078E590 | EnsemblPlants:CDX95719 | ProteinID:CDX95719 | ProteinID:CDX95719.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00101620001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF531 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EEFBB6 | SEG:seg | : | : |
Description
BnaC03g26000D
Coordinates
chrLK031890:-:941385..944097
Molecular Weight (calculated)
80332.5 Da
IEP (calculated)
5.277
GRAVY (calculated)
-0.415
Length
735 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIRHSTRFR GGDNSEDADV DNIDFIENEE DEEDVDNGGE EDDEIDPLDA FMEGIHEEVK AAPPPKPKEK VERYKDDEDD DHVVSFLKAK KDLGLTLAAD
101: ALNAGYNSDE EVYAAAKAVD AGMLEYDSDD NPIVVDKRKI EPIQALDHSS IDYEPINKDF YEEVESIASM SEQEALDYRK SLGIRVSGFD VPRAVKTFED
201: CGFSSQIMSA IKKQAYEKPT TIQCQALPIV LSGRDVIGIA KTGSGKTAAF VLPMIVHIMD QPELQREEGP IGVICAPTRE LAHQIFLEAK KFSKAYGLRV
301: SAVYGGMGKH EQLKELKAGC EIVVATPGRL IDMLKMKALT MMRASYLVLD EADRMFDLGF EPQVRSIVGQ IRPDRQTLLF SATMPWKVEK LAREILSDPI
401: RVTVGEAGMA NEDITQVVNV IPSDADKLPW LLEKLPGMID EGDVLVFASK KATVDEIEAQ LTLNGFKVAA LHGDKDQASR METLQKFKSG IYHVLVATDV
501: AARGLDIKSL KIVVNYDTAK DMDMHVHRIG RTGRAGDKDG VAYTLVTQRE ARFAGELINI LVAAGQNVPP ELMDLAMKDG RFKSKRDGRK GGGKKGGGRG
601: GGNRGVRGVD FGLGIGFNSE SSGTSSQAAP SRKGVISSVR TGVMAQFKNS FVAATPSSQQ SQAYPNKRLA LTGFVSGGTI GGNMGRAQTQ TQTQTPPVAT
701: SHNSSQKNPQ RFVSFLVALS EDRSRERKRK SGWDN
101: ALNAGYNSDE EVYAAAKAVD AGMLEYDSDD NPIVVDKRKI EPIQALDHSS IDYEPINKDF YEEVESIASM SEQEALDYRK SLGIRVSGFD VPRAVKTFED
201: CGFSSQIMSA IKKQAYEKPT TIQCQALPIV LSGRDVIGIA KTGSGKTAAF VLPMIVHIMD QPELQREEGP IGVICAPTRE LAHQIFLEAK KFSKAYGLRV
301: SAVYGGMGKH EQLKELKAGC EIVVATPGRL IDMLKMKALT MMRASYLVLD EADRMFDLGF EPQVRSIVGQ IRPDRQTLLF SATMPWKVEK LAREILSDPI
401: RVTVGEAGMA NEDITQVVNV IPSDADKLPW LLEKLPGMID EGDVLVFASK KATVDEIEAQ LTLNGFKVAA LHGDKDQASR METLQKFKSG IYHVLVATDV
501: AARGLDIKSL KIVVNYDTAK DMDMHVHRIG RTGRAGDKDG VAYTLVTQRE ARFAGELINI LVAAGQNVPP ELMDLAMKDG RFKSKRDGRK GGGKKGGGRG
601: GGNRGVRGVD FGLGIGFNSE SSGTSSQAAP SRKGVISSVR TGVMAQFKNS FVAATPSSQQ SQAYPNKRLA LTGFVSGGTI GGNMGRAQTQ TQTQTPPVAT
701: SHNSSQKNPQ RFVSFLVALS EDRSRERKRK SGWDN
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
Arabidopsis Description
RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.