CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014568.1-P	Field mustard	cytosol	77.59	70.72
CDX88990	Canola	cytosol, plastid	64.58	70.25
CDY47978	Canola	plastid	29.65	43.06
CDY06034	Canola	cytosol	38.88	41.04
CDX67749	Canola	cytosol	40.53	40.86
CDX71948	Canola	cytosol	40.03	40.7
CDX98301	Canola	cytosol	40.03	40.43
AT3G58510.2	Thale cress	cytosol	40.53	40.2
CDY14843	Canola	cytosol, plastid	39.04	38.73
CDX98304	Canola	cytosol, plastid	29.0	38.18
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	39.04	38.1
Solyc03g052980.2.1	Tomato	nucleus	37.89	37.58
PGSC0003DMT400002828	Potato	cytosol	37.89	37.22
KRH38030	Soybean	endoplasmic reticulum	37.23	36.99
CDX67752	Canola	cytosol	38.39	36.81
KRH71800	Soybean	plastid	36.41	36.17
CDY49232	Canola	cytosol	37.23	36.16
TraesCS4B01G126000.1	Wheat	cytosol, plastid	35.26	35.61
Os11t0599500-00	Rice	nucleus, plasma membrane	36.41	35.47
TraesCS4D01G148700.1	Wheat	golgi	35.09	35.44
CDX71944	Canola	cytosol	36.9	35.33
HORVU4Hr1G031280.1	Barley	cytosol, plastid	34.93	35.27
Zm00001d048924_P001	Maize	plasma membrane	35.26	35.2
KXG28851	Sorghum	cytosol, plastid	35.91	34.88
TraesCS4A01G141400.1	Wheat	plastid	35.09	32.47
CDX84112	Canola	nucleus	10.05	20.33
CDY02459	Canola	cytosol	15.98	19.44
CDY10596	Canola	nucleus	15.98	19.44
CDX84672	Canola	cytosol	14.0	19.02
CDY16735	Canola	cytosol	17.13	17.6
CDY48128	Canola	cytosol	17.13	17.51
CDX79384	Canola	cytosol	11.2	17.44
CDX83333	Canola	nucleus	17.79	16.95
CDY28671	Canola	cytosol	18.12	16.59
CDX91036	Canola	cytosol	18.62	16.52
CDY41747	Canola	nucleus	14.66	16.48
CDY66221	Canola	nucleus	14.5	16.42
CDY65864	Canola	nucleus	14.33	16.29
CDX91943	Canola	cytosol	17.63	16.09
CDY39973	Canola	cytosol	13.51	15.83
CDX87315	Canola	cytosol	13.51	15.83
CDY61276	Canola	cytosol	13.51	15.8
CDX67949	Canola	cytosol	14.0	15.62
CDY38671	Canola	cytosol	13.34	15.61
CDX74304	Canola	cytosol	17.3	15.26
CDY37796	Canola	cytosol	18.45	15.26
CDX80096	Canola	cytosol	18.29	15.25
CDX95719	Canola	cytosol	18.45	15.24
CDX85591	Canola	cytosol	18.62	15.03
CDY72529	Canola	cytosol	14.83	14.45
CDY37696	Canola	nucleus	14.0	14.41
CDY53786	Canola	nucleus	14.0	14.41
CDX79541	Canola	nucleus	13.01	12.56
CDX74101	Canola	cytosol	18.12	12.56
CDY08048	Canola	nucleus	18.12	12.5
CDY44720	Canola	nucleus	17.3	12.15
CDY41597	Canola	nucleus	13.18	10.35
CDY31513	Canola	nucleus	16.8	9.22
CDX91037	Canola	cytosol	1.81	6.29
CDX91039	Canola	cytosol	1.81	6.29

Protein Annotations

Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078EES9	EnsemblPlants:CDY00570	ProteinID:CDY00570
ProteinID:CDY00570.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00110328001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001611
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF13516	PFscan:PS51192	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00367	SMART:SM00487	SUPFAM:SSF52047
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0004EDDDC5	SEG:seg	:	:

Description

BnaC04g23550D

Coordinates

chrLK031920:+:356092..363265

Molecular Weight (calculated)

68205.7 Da

IEP (calculated)

5.925

GRAVY (calculated)

0.005

Length

607 amino acids

Sequence
(BLAST)

001: MSASWADAAD SDREVNPFGG DANQENTSID FDDYEDTPIE TSGEDVPPPV HAFADIDLGE ALNLNIRRCK YVTPTPIQRH VETLTLIHAW MQFHQLIFSS
101: LTFSFLIILL YDMLRSFMHT FALIKKNFYH TCLSSSLLFY FMLMIHDKAK KFSYQTGVKV VVAYGGTPID QQLMELEKGV DILVATPGRL NELLERATVT
201: MQMIKFLALD EADRMMDMGF EPQIRKIVEQ MDMPPRGRLA SDFLSNYIFL AVGMVGSSPD LITLKVEYVH DSDKRSHLMA LLHAQRENGT GDEKSLTLVF
301: VETKTGADTL ENWLCMNEFP ATSIHGDKTQ QPRYRQVKHI NLEFSQGIEG SHLLLVKSQC QNALLSLKCL NLNGCQKISD GGIEAITSIC PNLKAISIYW
401: NVRVTDDCIR HLVNNCRTII DLNLSGCKSI TDKGMQLVAE SYQDLESLNI TRCVKITYDG LLHVLHKCST LQTLNLYALS GFIDKAYKKI SLLADLRFLD
501: LCGAQNLFDE GLTHMAKCIK LESLNLTWCV QITDSGVITI ANSCTSLEFL SLFGIVGVTD RCLETLSQTC SATLTTLDVN GCIGIKRRSR EELLQMFPRL
601: TCFKVHS

Best Arabidopsis Sequence Match ( AT3G58530.1 )
(BLAST)

001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS

Arabidopsis Description

F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.