Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91039 | Canola | cytosol | 100.0 | 100.0 |
| CDX91036 | Canola | cytosol | 99.43 | 25.44 |
| CDX85591 | Canola | cytosol | 95.43 | 22.21 |
| CDX91943 | Canola | cytosol | 61.71 | 16.24 |
| CDX74304 | Canola | cytosol | 61.71 | 15.7 |
| CDY28671 | Canola | cytosol | 59.43 | 15.69 |
| CDX84112 | Canola | nucleus | 7.43 | 4.33 |
| CDY10596 | Canola | nucleus | 12.0 | 4.21 |
| CDY02459 | Canola | cytosol | 12.0 | 4.21 |
| CDY16735 | Canola | cytosol | 13.71 | 4.06 |
| CDY48128 | Canola | cytosol | 13.71 | 4.04 |
| CDX79384 | Canola | cytosol | 7.43 | 3.33 |
| CDX67752 | Canola | cytosol | 12.0 | 3.32 |
| CDY49232 | Canola | cytosol | 11.43 | 3.2 |
| CDY06034 | Canola | cytosol | 10.29 | 3.13 |
| CDY14843 | Canola | cytosol, plastid | 10.86 | 3.1 |
| CDX71944 | Canola | cytosol | 10.86 | 3.0 |
| CDX79541 | Canola | nucleus | 10.29 | 2.86 |
| CDX71948 | Canola | cytosol | 9.71 | 2.85 |
| CDX98301 | Canola | cytosol | 9.71 | 2.83 |
| CDX67749 | Canola | cytosol | 9.71 | 2.82 |
| CDX74101 | Canola | cytosol | 12.57 | 2.51 |
| CDX87315 | Canola | cytosol | 7.43 | 2.51 |
| CDY61276 | Canola | cytosol | 7.43 | 2.5 |
| CDY08048 | Canola | nucleus | 12.57 | 2.5 |
| CDX84672 | Canola | cytosol | 6.29 | 2.46 |
| CDY39973 | Canola | cytosol | 6.86 | 2.32 |
| CDY38671 | Canola | cytosol | 6.86 | 2.31 |
| CDY41747 | Canola | nucleus | 6.86 | 2.22 |
| CDX67949 | Canola | cytosol | 6.86 | 2.21 |
| CDY53786 | Canola | nucleus | 7.43 | 2.2 |
| CDX83333 | Canola | nucleus | 7.43 | 2.04 |
| CDY37696 | Canola | nucleus | 6.86 | 2.03 |
| CDY72529 | Canola | cytosol | 6.86 | 1.93 |
| CDX80096 | Canola | cytosol | 8.0 | 1.92 |
| CDY65864 | Canola | nucleus | 5.71 | 1.87 |
| CDY66221 | Canola | nucleus | 5.71 | 1.87 |
| CDY00570 | Canola | nucleus | 6.29 | 1.81 |
| CDY37796 | Canola | cytosol | 7.43 | 1.77 |
| CDX95719 | Canola | cytosol | 7.43 | 1.77 |
| CDY41597 | Canola | nucleus | 6.86 | 1.55 |
| CDY31513 | Canola | nucleus | 9.71 | 1.54 |
| CDY44720 | Canola | nucleus | 7.43 | 1.5 |
| CDX98304 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY47978 | Canola | plastid | 0.0 | 0.0 |
| CDX88990 | Canola | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX91037 | EnsemblPlantsGene:GSBRNA2T00151805001 | Gene3D:2.20.70.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001202 | InterPro:WW_dom | InterPro:WW_dom_sf | PFAM:PF00397 | PFscan:PS50020 | ProteinID:CDX91037 |
| ProteinID:CDX91037.1 | ScanProsite:PS01159 | SEG:seg | SMART:SM00456 | SUPFAM:SSF51045 | UniParc:UPI0004EDC9D7 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC02g05600D
Coordinates
chrLK031865:-:465716..466872
Molecular Weight (calculated)
18442.3 Da
IEP (calculated)
4.948
GRAVY (calculated)
-0.664
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATATAST IRYAPEDPNL PKPWKGLVDS RTGYLYFWNP ETNVTQYERP PGLAPPKPSP APVSSSVQAQ QQPSSGFSSG KEEDKYDNDG PKTDSGSRFS
101: EASRSGPMNS SNAASGLGNA SSGAVVPPPS AAGIEKMSPE AYCRRHEITV TGGQVPPPLM SFEATGFPPE LLREV
101: EASRSGPMNS SNAASGLGNA SSGAVVPPPS AAGIEKMSPE AYCRRHEITV TGGQVPPPLM SFEATGFPPE LLREV
001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
Arabidopsis Description
DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.