Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000447.1-P | Field mustard | cytosol | 100.0 | 94.65 |
| CDX95719 | Canola | cytosol | 96.86 | 83.95 |
| CDX80096 | Canola | cytosol | 94.19 | 82.42 |
| CDY37796 | Canola | cytosol | 94.35 | 81.88 |
| AT2G47330.1 | Thale cress | cytosol | 89.8 | 75.26 |
| KRG96540 | Soybean | cytosol, mitochondrion | 82.89 | 68.75 |
| KRH68277 | Soybean | nucleus | 82.73 | 67.39 |
| PGSC0003DMT400023277 | Potato | cytosol | 79.28 | 65.25 |
| Solyc01g079330.2.1 | Tomato | nucleus | 78.65 | 64.73 |
| VIT_07s0005g01600.t01 | Wine grape | cytosol | 77.39 | 63.94 |
| TraesCS4A01G121700.1 | Wheat | mitochondrion | 74.88 | 62.19 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 74.57 | 62.01 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 64.52 | 61.99 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 74.41 | 61.88 |
| Zm00001d047633_P002 | Maize | nucleus | 74.25 | 61.59 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 66.56 | 61.1 |
| Os03t0308500-01 | Rice | mitochondrion | 73.78 | 61.04 |
| Zm00001d028898_P011 | Maize | cytosol | 73.47 | 60.78 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 75.04 | 60.58 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 74.41 | 59.7 |
| CDY10596 | Canola | nucleus | 32.5 | 41.48 |
| CDY02459 | Canola | cytosol | 32.03 | 40.88 |
| CDY47978 | Canola | plastid | 26.69 | 40.67 |
| CDX84672 | Canola | cytosol | 27.0 | 38.48 |
| CDY16735 | Canola | cytosol | 33.59 | 36.21 |
| CDY48128 | Canola | cytosol | 33.75 | 36.2 |
| CDX98304 | Canola | cytosol, plastid | 25.43 | 35.14 |
| CDX87315 | Canola | cytosol | 28.57 | 35.14 |
| CDY61276 | Canola | cytosol | 28.57 | 35.07 |
| CDY39973 | Canola | cytosol | 28.26 | 34.75 |
| CDY72529 | Canola | cytosol | 33.91 | 34.67 |
| CDY38671 | Canola | cytosol | 28.1 | 34.49 |
| CDY06034 | Canola | cytosol | 30.46 | 33.74 |
| CDX67749 | Canola | cytosol | 31.87 | 33.72 |
| CDY41747 | Canola | nucleus | 28.1 | 33.15 |
| CDX98301 | Canola | cytosol | 31.08 | 32.95 |
| CDX67949 | Canola | cytosol | 28.1 | 32.9 |
| CDY14843 | Canola | cytosol, plastid | 31.24 | 32.52 |
| CDY65864 | Canola | nucleus | 27.16 | 32.4 |
| CDX71948 | Canola | cytosol | 30.3 | 32.33 |
| CDY66221 | Canola | nucleus | 27.16 | 32.28 |
| CDY49232 | Canola | cytosol | 30.46 | 31.04 |
| CDX71944 | Canola | cytosol | 30.77 | 30.91 |
| CDX67752 | Canola | cytosol | 30.46 | 30.65 |
| CDY37696 | Canola | nucleus | 27.94 | 30.17 |
| CDY53786 | Canola | nucleus | 27.79 | 30.0 |
| CDX79384 | Canola | cytosol | 17.9 | 29.23 |
| CDX84112 | Canola | nucleus | 13.19 | 28.0 |
| CDY44720 | Canola | nucleus | 37.36 | 27.55 |
| CDX79541 | Canola | nucleus | 26.53 | 26.87 |
| CDX91943 | Canola | cytosol | 27.47 | 26.32 |
| CDX91036 | Canola | cytosol | 28.26 | 26.32 |
| CDX88990 | Canola | cytosol, plastid | 22.76 | 25.99 |
| CDY28671 | Canola | cytosol | 27.0 | 25.94 |
| CDY41597 | Canola | nucleus | 31.4 | 25.87 |
| CDX74304 | Canola | cytosol | 27.63 | 25.58 |
| CDX85591 | Canola | cytosol | 28.41 | 24.07 |
| CDY31513 | Canola | nucleus | 37.99 | 21.88 |
| CDX74101 | Canola | cytosol | 28.26 | 20.55 |
| CDY08048 | Canola | nucleus | 28.26 | 20.45 |
| CDY00570 | Canola | nucleus | 16.95 | 17.79 |
| CDX91039 | Canola | cytosol | 2.04 | 7.43 |
| CDX91037 | Canola | cytosol | 2.04 | 7.43 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078D7V4 | EnsemblPlants:CDX83333 | ProteinID:CDX83333 | ProteinID:CDX83333.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00138895001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF531 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EDF27E | SEG:seg | : | : |
Description
BnaA03g21730D
Coordinates
chrLK031832:+:1093522..1095866
Molecular Weight (calculated)
69639.9 Da
IEP (calculated)
4.847
GRAVY (calculated)
-0.386
Length
637 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIRNSTRFR GGDNSEDADV DNIDFTENEE DEEDDVDNGA SASANDEIDP LDAFMEGIHE EMKAAPPPKP KEKVERYKDD EDDDHVVSFL KAKKDLGLTL
101: AADALNAGYN SDEEVYAAAK AVDAGMLEYD SDDNPIVVDK RKIEPIQALD HSSIDYEPIN KDFYEEVESI SRMSEQEALD YRKSLGIRVS GFDVPKAVKT
201: FEDCVFSTQI MSAIKKQAYE KPTTIQCQAL AVVLSGRDVI GIAKTGSGKT AAFVLPMIVH IMDQPELQRE EGPIGVICAP TRELAHQIFL EAKKFSKAYG
301: LRVSAVYGGM GKHEQLKELK AGCEIVVATP GRLIDMLKMK ALTMMRASYL VLDEADRMFD LGFEPQVRSI VGQIRPDRQT LLFSATMPWK VEKLAREILS
401: DPIRVTVGEA GMANEDITQV VNVIPSDADK LPWLLEKLPG MIDEGDVLVF ASKKATVDEI EAQLTLNGFK VAALHGDKDQ ASRMETLQKF KSGIYHVLVA
501: TDVAARGLDI KSLKTVVNYD TAKDMDMHVH RIGRTGRAGD KDGVAYTLVT QREARFAGEL INSLVAAGQN VPQELMDLAM KDGRFKSKRD GRKGGGKKGG
601: GRGGGNRGVR GVDFGLGIGF NSESSGTSSQ AAPSRKG
101: AADALNAGYN SDEEVYAAAK AVDAGMLEYD SDDNPIVVDK RKIEPIQALD HSSIDYEPIN KDFYEEVESI SRMSEQEALD YRKSLGIRVS GFDVPKAVKT
201: FEDCVFSTQI MSAIKKQAYE KPTTIQCQAL AVVLSGRDVI GIAKTGSGKT AAFVLPMIVH IMDQPELQRE EGPIGVICAP TRELAHQIFL EAKKFSKAYG
301: LRVSAVYGGM GKHEQLKELK AGCEIVVATP GRLIDMLKMK ALTMMRASYL VLDEADRMFD LGFEPQVRSI VGQIRPDRQT LLFSATMPWK VEKLAREILS
401: DPIRVTVGEA GMANEDITQV VNVIPSDADK LPWLLEKLPG MIDEGDVLVF ASKKATVDEI EAQLTLNGFK VAALHGDKDQ ASRMETLQKF KSGIYHVLVA
501: TDVAARGLDI KSLKTVVNYD TAKDMDMHVH RIGRTGRAGD KDGVAYTLVT QREARFAGEL INSLVAAGQN VPQELMDLAM KDGRFKSKRD GRKGGGKKGG
601: GRGGGNRGVR GVDFGLGIGF NSESSGTSSQ AAPSRKG
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
Arabidopsis Description
RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.