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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80096 Canola cytosol 86.58 90.38
Bra004464.1-P Field mustard cytosol 86.84 90.16
CDX83333 Canola nucleus 75.26 89.8
CDY37796 Canola cytosol 86.45 89.51
CDX95719 Canola cytosol 84.74 87.62
Bra000447.1-P Field mustard cytosol 75.39 85.14
KRG96540 Soybean cytosol, mitochondrion 78.55 77.73
KRH68277 Soybean nucleus 78.42 76.21
Solyc01g079330.2.1 Tomato nucleus 77.24 75.84
PGSC0003DMT400023277 Potato cytosol 76.97 75.58
VIT_07s0005g01600.t01 Wine grape cytosol 75.79 74.71
GSMUA_Achr1P24870_001 Banana cytosol 62.89 72.1
GSMUA_Achr1P13000_001 Banana cytosol 64.74 70.89
Zm00001d047633_P002 Maize nucleus 70.66 69.92
TraesCS4A01G121700.1 Wheat mitochondrion 70.39 69.75
EER94974 Sorghum cytosol, mitochondrion, nucleus, plastid 70.26 69.71
Os03t0308500-01 Rice mitochondrion 70.53 69.61
TraesCS4B01G181800.1 Wheat nucleus 70.0 69.45
Zm00001d028898_P011 Maize cytosol 69.21 68.31
TraesCS4D01G184200.1 Wheat mitochondrion 70.39 67.81
HORVU4Hr1G053550.2 Barley mitochondrion 69.87 66.88
AT1G28180.1 Thale cress cytosol 20.26 41.85
AT1G55150.2 Thale cress cytosol 27.37 39.54
AT5G63120.2 Thale cress cytosol 29.74 38.24
AT4G33370.1 Thale cress cytosol 24.47 34.32
AT3G58510.2 Thale cress cytosol 26.84 33.33
AT2G42520.2 Thale cress nucleus, plastid 27.76 33.33
AT5G51280.1 Thale cress cytosol 25.53 32.83
AT1G31970.1 Thale cress cytosol 23.16 32.77
AT3G58570.1 Thale cress cytosol 27.11 31.89
AT3G01540.2 Thale cress cytosol 24.87 30.53
AT5G14610.1 Thale cress cytosol 25.13 26.83
AT3G09620.2 Thale cress nucleus 33.82 25.96
AT2G33730.1 Thale cress nucleus 24.74 25.65
AT1G20920.3 Thale cress nucleus 35.66 23.24
AT3G06480.1 Thale cress cytosol 26.58 18.57
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1EntrezGene:819346ProteinID:AAB63833.2ProteinID:AEC10828.1ArrayExpress:AT2G47330
EnsemblPlantsGene:AT2G47330RefSeq:AT2G47330TAIR:AT2G47330RefSeq:AT2G47330-TAIR-GEnsemblPlants:AT2G47330.1TAIR:AT2G47330.1
EMBL:AY057700EMBL:AY124871Unigene:At.12226InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0010501
GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014
RefSeq:NP_566099.1UniProt:O22907InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PO:PO:0000005
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00039PFscan:PS51192PFscan:PS51194
PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF531InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487
SMART:SM00490SUPFAM:SSF52540UniParc:UPI00000A8D6ASEG:seg::
Description
RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
Coordinates
chr2:-:19428897..19431821
Molecular Weight (calculated)
83055.3 Da
IEP (calculated)
5.634
GRAVY (calculated)
-0.509
Length
760 amino acids
Sequence
(BLAST)
001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.