CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047633_P002	Maize	nucleus	96.21	95.96
Zm00001d028898_P011	Maize	cytosol	95.82	95.32
Os03t0308500-01	Rice	mitochondrion	90.6	90.13
TraesCS4A01G121700.1	Wheat	mitochondrion	87.73	87.61
TraesCS4B01G181800.1	Wheat	nucleus	87.47	87.47
TraesCS4D01G184200.1	Wheat	mitochondrion	88.51	85.93
HORVU4Hr1G053550.2	Barley	mitochondrion	86.95	83.88
GSMUA_Achr1P24870_001	Banana	cytosol	65.27	75.41
GSMUA_Achr1P13000_001	Banana	cytosol	67.62	74.64
CDX83333	Canola	nucleus	61.88	74.41
VIT_07s0005g01600.t01	Wine grape	cytosol	74.54	74.06
KRG96540	Soybean	cytosol, mitochondrion	73.37	73.18
KRH68277	Soybean	nucleus	72.98	71.48
CDX80096	Canola	cytosol	67.75	71.29
Bra004464.1-P	Field mustard	cytosol	67.89	71.04
CDX95719	Canola	cytosol	67.89	70.75
CDY37796	Canola	cytosol	67.75	70.71
Bra000447.1-P	Field mustard	cytosol	62.01	70.58
PGSC0003DMT400023277	Potato	cytosol	71.15	70.41
AT2G47330.1	Thale cress	cytosol	69.71	70.26
Solyc01g079330.2.1	Tomato	nucleus	70.89	70.16
KXG31614	Sorghum	cytosol	28.46	44.31
EES04084	Sorghum	cytosol	29.11	38.58
EER96257	Sorghum	cytosol	22.06	33.01
EER92293	Sorghum	cytosol	25.59	31.72
OQU76674	Sorghum	cytosol	23.24	31.39
KXG28851	Sorghum	cytosol, plastid	25.59	31.36
KXG34634	Sorghum	plastid	25.46	30.19
KXG37329	Sorghum	cytosol, plastid	24.93	30.08
OQU83862	Sorghum	nucleus	23.24	27.73
OQU86230	Sorghum	cytosol	24.93	26.71
OQU79814	Sorghum	nucleus	34.07	26.44
EES14596	Sorghum	nucleus	34.73	25.05
KXG37746	Sorghum	nucleus	25.33	24.01
KXG32714	Sorghum	nucleus	23.76	23.01
OQU84042	Sorghum	cytosol	27.55	15.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8081075	UniProt:C5WMG3	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EER94974
ProteinID:EER94974	ProteinID:EER94974.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G395100	SUPFAM:SSF52540
unigene:Sbi.18744	UniParc:UPI0001A82EE1	RefSeq:XP_002467976.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:68096692..68103192

Molecular Weight (calculated)

83462.3 Da

IEP (calculated)

5.864

GRAVY (calculated)

-0.461

Length

766 amino acids

Sequence
(BLAST)

001: MSKRPKLEGF SIPRPTSYNF ERSQPVQRLY RPTDDPDLDD IAFSDDAPSD APASTAVEGK AEDDEEIDPL DAFMAEIQEE IRAPPPPPKP EALRRADSDD
101: DEDDPVESFL RAKKDAGLTL AADAMRAGYD SDEEVYAAAK AVDAGMMEYD SDDNPIVVDK KKIEPIPALD HSTIEYDAFT KDFYEEKPSI SGMSDQEVAD
201: YMKSLAIRVS GFDVPRPIKN FQDCGFPVPL MNAIAKQAYE KPTTIQCQAL PIVLSGRDII GIAKTGSGKT AAFVLPMIVH IMDQPELEKE EGPIGVICAP
301: TRELAHQIYL EAKKFAKPYN LRVAAVYGGV SKFDQFKELK AGCEVVIATP GRLIDLLKMK ALKMFRATYL VLDEADRMFD LGFEPQIRSI VGQIRPDRQT
401: LLFSATMPYK VERLAREILT DPIRVTVGQV GGANEDIKQV VNVLPSDVEK MPWLLEKLPG MIDDGDVLVF ASKKARVDEI EKELNQRGFR IAALHGDKDQ
501: ASRMETLQKF KSGTYHVLVA TDVAARGLDI KSIKTVVNFD IAKEMDMHIH RIGRTGRAGD KDGTAYTLIT QKEARFAGEL VHSLIAAGQD VPNELMDLAM
601: KDGRFRAKRD SRKGGKKGGK GKGGGGGAGR GRGVRGVDFG LGIGYNAESG SQVPPPRSAA VNSLKTGMMQ QFKSSFVSGS SNTPSSSAPS FVRPALRGFV
701: SGGTIGGDAR PAQSAPTFVP ASRPAQPAPS VPAPRPAGNI NENGNSNPES SRDRSRERKR PSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.