Factsheet for Solyc01g079330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023277	Potato	cytosol	97.42	97.42
VIT_07s0005g01600.t01	Wine grape	cytosol	80.49	80.8
KRG96540	Soybean	cytosol, mitochondrion	78.68	79.3
KRH68277	Soybean	nucleus	79.59	78.77
CDX83333	Canola	nucleus	64.73	78.65
AT2G47330.1	Thale cress	cytosol	75.84	77.24
GSMUA_Achr1P24870_001	Banana	cytosol	65.37	76.32
GSMUA_Achr1P13000_001	Banana	cytosol	67.44	75.22
CDX95719	Canola	cytosol	71.32	75.1
CDY37796	Canola	cytosol	71.19	75.07
CDX80096	Canola	cytosol	70.54	75.0
Bra000447.1-P	Field mustard	cytosol	64.99	74.74
Bra004464.1-P	Field mustard	cytosol	70.54	74.59
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	70.16	70.89
Os03t0308500-01	Rice	mitochondrion	70.41	70.78
TraesCS4B01G181800.1	Wheat	nucleus	69.51	70.23
TraesCS4A01G121700.1	Wheat	mitochondrion	69.51	70.14
Zm00001d047633_P002	Maize	nucleus	69.51	70.05
Zm00001d028898_P011	Maize	cytosol	68.73	69.09
TraesCS4D01G184200.1	Wheat	mitochondrion	69.77	68.44
HORVU4Hr1G053550.2	Barley	mitochondrion	68.99	67.25
Solyc12g044860.1.1	Tomato	nucleus	27.13	43.84
Solyc03g112350.2.1	Tomato	nucleus	29.72	35.33
Solyc09g015930.2.1	Tomato	plastid	25.32	35.13
Solyc03g117440.2.1	Tomato	cytosol, nucleus	26.36	34.29
Solyc06g068280.2.1	Tomato	extracellular, nucleus	26.23	34.12
Solyc12g035130.1.1	Tomato	nucleus	25.84	32.68
Solyc08g076200.2.1	Tomato	nucleus	23.26	32.55
Solyc01g005960.2.1	Tomato	plastid	25.32	32.45
Solyc03g052980.2.1	Tomato	nucleus	25.45	32.19
Solyc02g086660.2.1	Tomato	nucleus	26.23	28.75
Solyc02g068190.1.1	Tomato	cytosol, nucleus	23.0	26.89
Solyc12g098700.1.1	Tomato	nucleus	36.56	24.67
Solyc02g081290.2.1	Tomato	nucleus	20.41	24.2
Solyc01g057760.2.1	Tomato	nucleus	27.0	17.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4AXH8	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g079330.2	EnsemblPlants:Solyc01g079330.2.1	UniParc:UPI0002761B45	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 24 [Source:Projected from Arabidopsis thaliana (AT2G47330) UniProtKB/Swiss-Prot;Acc:O22907]

Coordinates

chr1:-:78398525..78407849

Molecular Weight (calculated)

84444.8 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.526

Length

774 amino acids

Sequence
(BLAST)

001: MSKRKFGFEG FGINRQTTYN FERNQAPQRL YVPPSSRSGG SHDNYEDTDL DNIEYDEHDA VGGNNNDGGG GGGEDDEIDP LDAFMEGIHQ EMKAAPPPKP
101: KEKLDKYKDD VDDDPMESFL RAKKDVGLQL AADALHAGYN SDEEVYAAAK AVDAGLVEYD SDDNPIVVDK KKIEPITALD HSEIDYEPFN KDFYEEKPSI
201: SGMSDQEVNE YRTGLAIRVS GFDVPRPIKT FEDTGFSAEL MKAISKQGYE RPTPIQCQAL PIVLSGRDII GIAKTGSGKT AAFVLPMIVH IMDQPELQKE
301: EGPIGVICAP TRELAHQIFV EAKKFSKSHG IRVSAVYGGM SKLDQYKELK AGCEIVVATP GRLIDMIRKK AFTMLRATYL VLDEADRMFD LGFEPQIRSI
401: VGQIRPDRQT LLFSATMPRK VEKLAREILT DPVRVTVGEI GTANEDITQI VEVIPSDAEK LPWLLEKLPG LIDNGDVLVF ASKKATVDEI ESQLAQKGFR
501: VAALHGDKDQ VSRTETLQKF KSGIYHVLIA TDVAARGLDI KSLKSVVNYD IAKDMDMHVH RIGRTGRAGD KDGTAFTLIT HKEARFAGEL ANSLVAAGQT
601: VSVELMDLAM KDGRFRSKRD ARKGGGKRAK GRGGGNNKGV RGVDFGLGIG YNPESNNPLQ SAAPSRSAAV NSLRTGMMSQ FKSSFVAASS NSQNQGMNNT
701: AGAFPNKKMV LQGFVSGGTI GGNSNTPHIS STFTAATPGG YTSSQPARDG ANQKSSESSK ERSRERRRPS GWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.