Factsheet for Solyc09g015930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071932	Potato	cytosol	19.71	99.1
VIT_06s0004g08160.t01	Wine grape	plastid	75.45	74.12
KRH30661	Soybean	endoplasmic reticulum	74.01	73.1
KRG98124	Soybean	endoplasmic reticulum	73.66	71.98
Solyc12g044860.1.1	Tomato	nucleus	31.72	36.95
Solyc01g005960.2.1	Tomato	plastid	34.95	32.28
Solyc03g052980.2.1	Tomato	nucleus	35.3	32.19
Solyc03g117440.2.1	Tomato	cytosol, nucleus	30.65	28.74
Solyc06g068280.2.1	Tomato	extracellular, nucleus	30.65	28.74
Solyc03g112350.2.1	Tomato	nucleus	32.44	27.8
Solyc12g035130.1.1	Tomato	nucleus	29.93	27.29
Solyc08g076200.2.1	Tomato	nucleus	26.88	27.12
Solyc01g079330.2.1	Tomato	nucleus	35.13	25.32
Solyc02g068190.1.1	Tomato	cytosol, nucleus	29.93	25.23
Solyc02g086660.2.1	Tomato	nucleus	30.65	24.22
Os02t0150000-00	Rice	mitochondrion	6.99	22.54
Solyc02g081290.2.1	Tomato	nucleus	26.16	22.36
Solyc12g098700.1.1	Tomato	nucleus	32.44	15.78
Solyc01g057760.2.1	Tomato	nucleus	30.82	14.09

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CS61
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF556	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g015930.2	EnsemblPlants:Solyc09g015930.2.1	UniParc:UPI000276BF2F	SEG:seg

Description

No Description!

Coordinates

chr9:+:11381642..11399733

Molecular Weight (calculated)

60845.7 Da

IEP (calculated)

7.105

GRAVY (calculated)

-0.282

Length

558 amino acids

Sequence
(BLAST)

001: MSYVPPHLRN SAAGKTTTTP TINSIGADHF SSKHTSRISS LEKSSNGYSS SARRSSLNYS LPNTFAVPDP IFPHWKPSER VLRLKSEQIE EIRLRLNVDV
101: NVSPVSCPAP SPIESFPDMC LHASIMKDIE KHGYTAPTSI QAQAMPVALS GRDLLGCAET GSGKTAAFSI PMIQHCLAQQ PLQRGDGPLA LVLAPTRELA
201: QQIEKEVTAF SMSLDSFKTA IVVGGTNISE QRSELRAGVH IVVATPGRLI DHLQQGNTSL GRIAFVVLDE ADRMLDMGFE PQIREVMRNL PVKHQTLLFS
301: ATMPAEIEAL AQDYLTNPVR IKVGKVSSPT ANVSQTLEKV PENDKIDRLL DLLVEEAAQA EKSGHPFPLT IVFVERKTKC DEVAEALTQQ GLLATALHGG
401: RSQNEREAAL RDFRHGPINI LVSTDVASRG LDVTGVAHVI NLDLPKTMED YVHRIGRTGR AGSTGRATSF YTDRDMYLVA QIRRAIADIG SGNDVTIAMG
501: KTARRKEREA AAAEKEARSE LSKFSLVGST VNVEDKYRHM IAPSMIKKEG AADDAWDD

Best Arabidopsis Sequence Match ( AT3G58570.1 )
(BLAST)

001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD

Arabidopsis Description

RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.