Factsheet for PGSC0003DMT400071932

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015930.2.1	Tomato	plastid	99.1	19.71
VIT_06s0004g08160.t01	Wine grape	plastid	75.68	14.79
KRH30661	Soybean	endoplasmic reticulum	71.17	13.98
KRG98124	Soybean	endoplasmic reticulum	69.37	13.49
Os02t0150000-00	Rice	mitochondrion	7.21	4.62
PGSC0003DMT400083878	Potato	cytosol	20.72	4.59
PGSC0003DMT400002828	Potato	cytosol	25.23	4.53
PGSC0003DMT400081851	Potato	cytosol	24.32	4.47
PGSC0003DMT400010921	Potato	cytosol	22.52	4.15
PGSC0003DMT400024026	Potato	nucleus	20.72	4.13
PGSC0003DMT400080614	Potato	nucleus	21.62	3.92
PGSC0003DMT400023277	Potato	cytosol	25.23	3.62
PGSC0003DMT400024330	Potato	cytosol	20.72	3.44
PGSC0003DMT400001391	Potato	cytosol	22.52	3.42
PGSC0003DMT400036663	Potato	cytosol	18.02	3.4
PGSC0003DMT400073340	Potato	cytosol	17.12	3.23
PGSC0003DMT400046821	Potato	cytosol	20.72	3.2
PGSC0003DMT400043101	Potato	nucleus	19.82	3.11
PGSC0003DMT400011665	Potato	nucleus	25.23	2.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400071932	EnsemblPlantsGene:PGSC0003DMG400027985	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR24031
PANTHER:PTHR24031:SF556	PGSC:PGSC0003DMG400027985	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0002965AC7	UniProt:M1CPI1
MapMan:35.2	:	:	:	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400027985]

Coordinates

chr9:-:33741154..33747658

Molecular Weight (calculated)

12238.4 Da

IEP (calculated)

8.912

GRAVY (calculated)

-0.638

Length

111 amino acids

Sequence
(BLAST)

001: MEDYVHRIGR TGRAGSTGRA TSFYTDRDMY LVAQIRRAIA DIGSGNDVTI AMGKTARRKE REAAAAEKEA RSELSKLSLV GSTVNVEDKY RHMIAPSMIK
101: KEGAADDAWD D

Best Arabidopsis Sequence Match ( AT3G01540.2 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.