Factsheet for VIT_06s0004g08160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30661	Soybean	endoplasmic reticulum	76.23	76.64
PGSC0003DMT400071932	Potato	cytosol	14.79	75.68
Solyc09g015930.2.1	Tomato	plastid	74.12	75.45
KRG98124	Soybean	endoplasmic reticulum	75.7	75.31
VIT_09s0002g02100.t01	Wine grape	cytosol	31.69	34.95
VIT_06s0004g00850.t01	Wine grape	cytosol	23.24	34.55
VIT_13s0156g00070.t01	Wine grape	cytosol	33.98	31.28
VIT_11s0016g05090.t01	Wine grape	cytosol	33.1	30.67
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	33.27	30.39
VIT_09s0002g08120.t01	Wine grape	cytosol	30.81	29.81
VIT_07s0005g01600.t01	Wine grape	cytosol	34.33	25.29
VIT_09s0054g01810.t01	Wine grape	cytosol	31.34	25.11
VIT_03s0038g00010.t01	Wine grape	cytosol	30.99	24.72
VIT_02s0109g00380.t01	Wine grape	cytosol	27.29	24.68
VIT_17s0000g09130.t01	Wine grape	cytosol	26.06	24.22
Os02t0150000-00	Rice	mitochondrion	6.87	22.54
VIT_14s0066g01020.t01	Wine grape	cytosol	29.93	19.7
VIT_03s0038g04130.t01	Wine grape	nucleus	32.92	16.3
VIT_05s0020g00470.t01	Wine grape	cytosol	30.63	15.09

Protein Annotations

EntrezGene:100258635	wikigene:100258635	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI15808	ProteinID:CBI15808.3
ncoils:Coil	UniProt:D7SJI2	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100258635
wikigene:LOC100258635	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF556	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00015C7FC5	ArrayExpress:VIT_06s0004g08160	EnsemblPlantsGene:VIT_06s0004g08160
EnsemblPlants:VIT_06s0004g08160.t01	unigene:Vvi.8622	RefSeq:XP_002266157	RefSeq:XP_002266157.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:8895193..8916559

Molecular Weight (calculated)

61837.7 Da

IEP (calculated)

7.039

GRAVY (calculated)

-0.238

Length

568 amino acids

Sequence
(BLAST)

001: MSYVPPHLRN PSSSISRTSK PTETSAVTLD DTHRTTNNLS YSSTNSHLSH SNASSSPSLS RWASSNAAAV PRTPSVPEPV FPQWKPSDRV FLMKPEQIEE
101: VRLRLNVDVT VAPDLPPAPA PIESFTDMGL HQSIMKDITF HEYTRPTFIQ AQAMPVALSG RDLLGCAETG SGKTAAFAIP MIQHCLAQPP VRRGDGPLAL
201: VLAPTRELAQ QIEKEVKAFS RSLDSFRTAI VVGGTNISEQ RSELRAGVNI VVATPGRFIH HLQEGNTSLS RISFVVLDEA DRMLDMGFEP QIREVMQNLP
301: QKHQTLLFSA TMPMEIETLA QEYLNNPVQV KVGKVSCPTA NVSQILEKVS ESEKIDGLLA LLVEEASQAE RCGRPFPLTI VFVERKTRCD EVAEALVAQG
401: LRAVALHGGR SQAEREAALR DFRNGATNIL VATDVASRGL DVTGVAHVIN LDLPKAMENY VHRIGRTGRA GSTGQATSFY TDRDVFLVAH IRKAIADVGS
501: GNTVAFATGK VARKKEREAA AAQKEARIAL SNLSLMGPTS LNIEEKYRFM MSPSSIKTEG AADDAWDD

Best Arabidopsis Sequence Match ( AT1G20920.2 )
(BLAST)

001: MDVDEETKPE NDGDAKMVDL ENETAATVSE SGGDGAVDEE EIDPLDAFMN TMVLPEVEKF CNGAPPPAVN DGTLDSKMNG KESGDRPKKG FNKALGRIIQ
101: GEDSDSDYSE PKNDDDPSLD EDDEEFMKRV KKTKAEKLSL VDHSKIEYEP FRKNFYIEVK DISRMTQEEV NTYRKELELK VHGKDVPRPI KFWHQTGLTS
201: KILDTMKKLN YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGDGPIGLVM APTRELVQQI HSDIRKFSKP LGIRCVPVYG
301: GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PERQTVLFSA TFPRQVETLA RKVLNKPVEI
401: QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWSEKGK ILVFVQSQEK CDALYRDMIK SSYPCLSLHG GKDQTDREST ISDFKNDVCN LLIATSVAAR
501: GLDVKELELV VNFDAPNHYE DYVHRVGRTG RAGRKGCAVT FISEDDAKYA PDLVKALELS EQPVPDDLKA LADGFMVKVK QGIEQAHGTG YGGSGFKFNE
601: EEEEVRKAAK KAQAKEYGFE EDKSDSEDEN DVVRKAGGGE ISQQQATFAQ IAAIAAAAKA AAAAPVSAPV TANQLLANGG GLAAMPGVLP VTVPTLPSEG
701: AGRAAAMVAA MNLQHNLAKI QADAMPEHYE AELEINDFPQ NARWKVTHKE TLGPISEWTG AAITTRGQFY PTGRIPGPGE RKLYLFIEGP SEKSVKHAKA
801: ELKRVLEDIT NQAMSSLPGG ASGRYSVL

Arabidopsis Description

RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.