Factsheet for VIT_03s0038g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0054g01810.t01	Wine grape	cytosol	96.35	96.76
KRH51212	Soybean	nucleus	85.39	86.73
KRH01937	Soybean	nucleus	85.96	86.69
PGSC0003DMT400043101	Potato	nucleus	84.13	84.72
CDX84672	Canola	cytosol	52.53	83.67
GSMUA_Achr3P01410_001	Banana	nucleus	61.8	83.49
Solyc02g081290.2.1	Tomato	nucleus	76.4	83.31
CDY53786	Canola	nucleus	67.28	81.19
Bra021872.1-P	Field mustard	nucleus	74.16	80.12
PGSC0003DMT400024330	Potato	cytosol	75.0	79.82
Solyc02g068190.1.1	Tomato	cytosol, nucleus	74.02	79.61
AT2G33730.1	Thale cress	nucleus	80.76	78.44
CDY37696	Canola	nucleus	63.9	77.12
CDX79541	Canola	nucleus	67.42	76.31
TraesCS4A01G270200.1	Wheat	nucleus	76.83	75.24
TraesCS4B01G043900.1	Wheat	nucleus	76.83	75.03
Zm00001d033704_P007	Maize	extracellular	77.67	74.93
Zm00001d013453_P001	Maize	nucleus	77.25	74.93
Os03t0708600-02	Rice	nucleus	75.98	73.51
HORVU6Hr1G080730.2	Barley	cytosol	33.29	72.48
HORVU4Hr1G007110.17	Barley	mitochondrion	77.11	71.3
TraesCS6B01G364300.1	Wheat	nucleus, plastid	64.33	70.57
TraesCS6B01G364400.1	Wheat	nucleus, plastid	64.33	70.57
TraesCS1B01G445500.1	Wheat	cytosol	44.66	69.58
KXG37746	Sorghum	nucleus	77.95	68.69
TraesCS4D01G041400.1	Wheat	nucleus	76.83	68.29
TraesCS5B01G079300.1	Wheat	nucleus	68.82	68.15
HORVU3Hr1G031710.1	Barley	mitochondrion	24.72	67.43
HORVU1Hr1G083090.1	Barley	cytosol	23.74	67.33
TraesCS1A01G415500.1	Wheat	cytosol	59.69	65.99
HORVU1Hr1G091050.3	Barley	nucleus	53.93	64.21
OQU83862	Sorghum	nucleus	57.44	63.71
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	29.49	55.26
VIT_09s0002g02100.t01	Wine grape	cytosol	24.86	34.37
VIT_06s0004g00850.t01	Wine grape	cytosol	18.12	33.77
VIT_13s0156g00070.t01	Wine grape	cytosol	27.11	31.28
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	27.25	31.19
VIT_06s0004g08160.t01	Wine grape	plastid	24.72	30.99
VIT_09s0002g08120.t01	Wine grape	cytosol	24.58	29.81
VIT_02s0109g00380.t01	Wine grape	cytosol	25.7	29.14
VIT_11s0016g05090.t01	Wine grape	cytosol	24.72	28.71
VIT_07s0005g01600.t01	Wine grape	cytosol	27.39	25.29
VIT_17s0000g09130.t01	Wine grape	cytosol	20.93	24.39
VIT_14s0066g01020.t01	Wine grape	cytosol	26.12	21.55
VIT_03s0038g04130.t01	Wine grape	nucleus	30.06	18.66
VIT_05s0020g00470.t01	Wine grape	cytosol	25.56	15.78

Protein Annotations

EntrezGene:100241918	wikigene:100241918	MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ProteinID:CCB60728	ProteinID:CCB60728.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6I1B2	EMBL:FN596508	GO:GO:0000166	GO:GO:0000375
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005682
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100241918	wikigene:LOC100241918	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
TIGR:TC57408	UniParc:UPI000210AA8C	ArrayExpress:VIT_03s0038g00010	EnsemblPlantsGene:VIT_03s0038g00010	EnsemblPlants:VIT_03s0038g00010.t01	unigene:Vvi.18315
RefSeq:XP_003631587	RefSeq:XP_003631587.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:3056..5194

Molecular Weight (calculated)

81785.2 Da

IEP (calculated)

9.244

GRAVY (calculated)

-0.847

Length

712 amino acids

Sequence
(BLAST)

001: MKRSIEEDIS TTIVSAATNM KKPVFLTKAQ REQLALQRRH EEIAEQKRRA EQQLLQARSS SGNHSSHAAS TNKPSDPSLD SRHHRSSRDR DRDRDRDRDR
101: DRDRDSERRN RDREREEEAK VRERARSEKL ADREREKELE SIKEQYLGSK KPKKRVIKPS EKFRFSFDWE NTEDTSRDMN SLYQNPHEAQ LLFGRGFRAG
201: MDRREQKKLA AKNEKEMREE IRKKEGVEER PEEAAAQRQK EQAAELYDTF DMRVDRHWTE KKLEEMTERD WRIFREDFNI SYKGSKIPRP MRSWVESKLS
301: TELLKAVERA GYKTPSPIQM AAIPLGLQQR DVIGIAETGS GKTAAFVLPM LTYISRLPPM SEENEAEGPY AVVMAPTREL AQQIEDETVK FAHYLGIKVV
401: SIVGGQSIEE QGFRIRQGCE VVIATPGRLI DCLERRYAVL NQCNYVVLDE ADRMIDMGFE PQVVGVLDAM PSSNLKPENE DEELDEKKIY RTTYMFSATM
501: PPAVERLARK YLRNPVVVTI GTAGKATDLI TQHVIMMKES EKMFKLQKLL DELGDKTAIV FINTKKSADN LAKGLDKAGY RVTTLHGGKS QEQREISLEG
601: FRTKRYNVLV ATDVAGRGID IPDVAHVINY DMPGNIEMYT HRIGRTGRAG KTGVATTFLT LHDSDVFYDL KQMLIQNNSP VPPELARHEA SKFKPGAIPD
701: RPPRRNDTVF AH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.