Factsheet for PGSC0003DMT400024330

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068190.1.1	Tomato	cytosol, nucleus	92.97	93.96
PGSC0003DMT400043101	Potato	nucleus	83.11	78.64
CDX84672	Canola	cytosol	51.57	77.18
VIT_09s0054g01810.t01	Wine grape	cytosol	80.12	75.6
VIT_03s0038g00010.t01	Wine grape	cytosol	79.82	75.0
KRH51212	Soybean	nucleus	77.13	73.61
KRH01937	Soybean	nucleus	77.43	73.37
GSMUA_Achr3P01410_001	Banana	nucleus	56.95	72.3
Bra021872.1-P	Field mustard	nucleus	69.06	70.11
CDY53786	Canola	nucleus	61.58	69.83
CDY37696	Canola	nucleus	60.24	68.31
HORVU6Hr1G080730.2	Barley	cytosol	33.33	68.2
AT2G33730.1	Thale cress	nucleus	73.84	67.39
CDX79541	Canola	nucleus	63.23	67.25
Zm00001d033704_P007	Maize	extracellular	73.39	66.53
TraesCS4A01G270200.1	Wheat	nucleus	72.2	66.44
TraesCS4B01G043900.1	Wheat	nucleus	72.2	66.26
TraesCS1B01G445500.1	Wheat	cytosol	45.14	66.08
Zm00001d013453_P001	Maize	nucleus	72.5	66.08
Os03t0708600-02	Rice	nucleus	71.45	64.95
TraesCS6B01G364400.1	Wheat	nucleus, plastid	62.93	64.87
TraesCS6B01G364300.1	Wheat	nucleus, plastid	62.93	64.87
HORVU3Hr1G031710.1	Barley	mitochondrion	25.26	64.75
HORVU4Hr1G007110.17	Barley	mitochondrion	72.35	62.86
HORVU1Hr1G083090.1	Barley	cytosol	23.32	62.15
TraesCS5B01G079300.1	Wheat	nucleus	65.32	60.78
KXG37746	Sorghum	nucleus	73.39	60.77
TraesCS1A01G415500.1	Wheat	cytosol	58.15	60.4
TraesCS4D01G041400.1	Wheat	nucleus	72.2	60.3
OQU83862	Sorghum	nucleus	57.1	59.5
HORVU1Hr1G091050.3	Barley	nucleus	52.47	58.7
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	29.15	51.32
PGSC0003DMT400083878	Potato	cytosol	25.56	34.13
PGSC0003DMT400010921	Potato	cytosol	26.91	29.9
PGSC0003DMT400081851	Potato	cytosol	26.46	29.3
PGSC0003DMT400002828	Potato	cytosol	26.91	29.13
PGSC0003DMT400024026	Potato	nucleus	24.07	28.9
PGSC0003DMT400036663	Potato	cytosol	25.41	28.86
PGSC0003DMT400073340	Potato	cytosol	25.11	28.52
PGSC0003DMT400080614	Potato	nucleus	24.81	27.08
PGSC0003DMT400001391	Potato	cytosol	26.91	24.66
PGSC0003DMT400046821	Potato	cytosol	26.46	24.65
PGSC0003DMT400023277	Potato	cytosol	27.2	23.51
PGSC0003DMT400071932	Potato	cytosol	3.44	20.72
PGSC0003DMT400011665	Potato	nucleus	26.61	15.96

Protein Annotations

EntrezGene:102584823	MapMan:16.4.7.1.3	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1AJX4
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400009407	PGSC:PGSC0003DMG400009407	EnsemblPlants:PGSC0003DMT400024330
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295E00B
RefSeq:XP_006365023.1	RefSeq:XP_006365024.1	SEG:seg	:	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400009407]

Coordinates

chr2:+:26927957..26933255

Molecular Weight (calculated)

76416.2 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.735

Length

669 amino acids

Sequence
(BLAST)

001: MTISERSMNR PVGIKPDPSK KPVYLTKAQR EQLALQDEIA DQKRCHEHLQ AKYNCPSSDN HYCGKNRKRD RDRNSDRDRE KEPNRVRLEN PAEKELEAIH
101: EQYLGSKKPK KRVITPSAKL RSSFDWQNSE DTSRDVNPLY QNPHEARPHF GRGFFGGIDR REQKKLAIKN EREMQEEIWK KGGVEATAVE AAALKKKEQN
201: ADLYDTFDMR VDQHWTDKKL EEMTERDWRI FREDYNISYK GSRIPRPMRN WAESKLTTEL LKAVERAGYK KPSPIQMASI PLGLQQRDVI GVAETGSGKT
301: AAFVLPMLNY ITRLPPLSEE NEAEGPYAVV MVPTRELAQQ IEDETVKFAH YLGIKVVSIV GGQSIEEQGF RIRQGCEVVI ATPGRLLDCL ERRYCVMNQC
401: NYVVLDEADR MIDMGFGPQV VGVLDAMPSS NMKPKNEDEE LDEKKIYRTT YMFSATMPPA VERLARNYLR NPAVVTIGTA GKATDRITQH IFMVEESEKM
501: FKLQRFLDEL GDKTAIVFIN SRKRVDTVAK NLDKSGYRVT TLHGGKSQEQ REISLEGFRT KKYNVLVASD VAGRGIDIPD VAHVINYDMP NKLEAYTHRI
601: GRTGRAGKTG VATTFLTLQD TEVFYDLTQM LIQSNSHVPP ELARHDASKL KPGSIPGRPP RRNDIVFTH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.