Factsheet for PGSC0003DMT400010921

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
nucleus 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081851	Potato	cytosol	88.21	87.91
VIT_06s0004g00850.t01	Wine grape	cytosol	50.33	79.32
KRH58901	Soybean	nucleus	80.73	79.15
KRH42811	Soybean	endoplasmic reticulum	80.73	78.51
KRG97325	Soybean	endoplasmic reticulum	76.74	78.17
KRH31589	Soybean	nucleus	76.58	76.32
PGSC0003DMT400002828	Potato	cytosol	77.74	75.73
Os11t0599500-00	Rice	nucleus, plasma membrane	74.25	71.75
TraesCS4D01G148700.1	Wheat	golgi	71.26	71.38
TraesCS4B01G126000.1	Wheat	cytosol, plastid	71.26	71.38
Zm00001d048924_P001	Maize	plasma membrane	71.93	71.22
HORVU4Hr1G031280.1	Barley	cytosol, plastid	70.93	71.05
KXG28851	Sorghum	cytosol, plastid	71.93	69.28
TraesCS4A01G141400.1	Wheat	plastid	70.76	64.94
PGSC0003DMT400083878	Potato	cytosol	32.23	38.72
PGSC0003DMT400080614	Potato	nucleus	33.89	33.28
PGSC0003DMT400024026	Potato	nucleus	28.57	30.88
PGSC0003DMT400036663	Potato	cytosol	29.24	29.88
PGSC0003DMT400073340	Potato	cytosol	29.07	29.71
PGSC0003DMT400001391	Potato	cytosol	34.39	28.36
PGSC0003DMT400043101	Potato	nucleus	31.89	27.16
PGSC0003DMT400024330	Potato	cytosol	29.9	26.91
PGSC0003DMT400046821	Potato	cytosol	31.89	26.74
PGSC0003DMT400023277	Potato	cytosol	33.55	26.1
PGSC0003DMT400071932	Potato	cytosol	4.15	22.52
PGSC0003DMT400011665	Potato	nucleus	32.06	17.31

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0ZYS2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400004277
PGSC:PGSC0003DMG400004277	EnsemblPlants:PGSC0003DMT400010921	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002969A8C
SEG:seg	:	:	:	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400004277]

Coordinates

chr12:-:61055413..61061221

Molecular Weight (calculated)

65387.1 Da

IEP (calculated)

8.625

GRAVY (calculated)

-0.428

Length

602 amino acids

Sequence
(BLAST)

001: MPTSWADSVS AAENLAAARP RSSYVPPHLR NRPPSTDPPA HASYAGPAAS VQDQSGYGGP NVGGSRWSGP RNDFRSGYGG GGGRGGGWNN RTGGWDRGRD
101: REANPFADDD AEPFVEPENS GINFDAYEDI PVETSGDNVP PPVNTFVEID LGEAVNLNIR RCKYVKPTPV QKHAIPIALA GRDLMACAQT GSGKTAAFCF
201: PIISGIMRGQ FPRPPRPRVA FPLALILSPT RELSCQIHDE AKKFAYQTGV RVVVAYGGAP INQQLRELER GVHILVATPG RLVDLLERAR VSLQMIRYLA
301: LDEADRMLDM GFEPQIRKIV QQMDMPPPGV RQTMLFSATF PKEIQRLALD FLSSYIFLAV GRVGSSTDLI VQRVEYVQET DKRSHLMDLL HAQRANGSHG
401: KQALTLVFVE TKKGADSLEH WLCMNGFPAT AIHGDRTQQE REYALKSFKT GNTPILVATD VAARGLDIPH VAHVVNFDIP NDIDDYVHRI GRTGRAGKSG
501: LATAFFNENN SSVARSLADL MQEANQEVPA WLSRYAARSS HGGSKNRRGG NRFGGRDFRK DSSFNRGGVT DYYGGANMSS GYGAPGGYAA PYGGAGVTSA
601: WD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.