Factsheet for PGSC0003DMT400001391

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086660.2.1	Tomato	nucleus	91.1	94.19
PGSC0003DMT400080614	Potato	nucleus	65.21	77.65
Bra040699.1-P	Field mustard	cytosol	57.67	69.13
AT3G01540.2	Thale cress	cytosol	57.81	68.17
Bra001004.1-P	Field mustard	cytosol	58.63	67.3
Bra023478.1-P	Field mustard	cytosol	59.59	64.35
CDY28671	Canola	cytosol	57.67	63.5
CDX91943	Canola	cytosol	57.53	63.16
CDX91036	Canola	cytosol	59.04	63.01
AT5G14610.1	Thale cress	cytosol	59.86	61.38
CDX74304	Canola	cytosol	57.67	61.19
KRH56577	Soybean	nucleus	64.11	60.39
KRG93254	Soybean	endoplasmic reticulum	63.84	60.05
TraesCS3A01G130200.4	Wheat	cytosol	52.6	59.08
TraesCS3B01G149300.8	Wheat	cytosol	52.47	58.92
TraesCS3D01G131100.11	Wheat	cytosol	52.6	58.81
VIT_14s0066g01020.t01	Wine grape	cytosol	68.9	58.29
CDX85591	Canola	cytosol	59.45	57.71
Zm00001d008725_P003	Maize	cytosol	53.97	56.85
Zm00001d039673_P002	Maize	cytosol	53.15	55.35
HORVU3Hr1G024610.13	Barley	cytosol, plastid	53.15	54.88
OQU86230	Sorghum	cytosol	53.29	54.41
GSMUA_Achr8P31890_001	Banana	nucleus	58.49	54.33
Os01t0172200-01	Rice	cytosol	54.25	52.17
KXG32714	Sorghum	nucleus	56.44	52.09
Zm00001d011155_P012	Maize	nucleus	55.75	51.98
Os01t0549400-01	Rice	nucleus	56.16	51.77
Zm00001d044510_P002	Maize	mitochondrion	56.3	51.25
TraesCS3D01G202500.3	Wheat	nucleus	54.38	49.07
TraesCS3B01G230800.1	Wheat	nucleus	52.47	48.79
TraesCS3A01G194200.1	Wheat	nucleus	52.33	48.79
PGSC0003DMT400083878	Potato	cytosol	32.6	47.51
PGSC0003DMT400081851	Potato	cytosol	28.63	34.6
PGSC0003DMT400010921	Potato	cytosol	28.36	34.39
PGSC0003DMT400046821	Potato	cytosol	33.29	33.84
PGSC0003DMT400002828	Potato	cytosol	28.36	33.5
PGSC0003DMT400024026	Potato	nucleus	25.48	33.39
PGSC0003DMT400073340	Potato	cytosol	23.15	28.69
PGSC0003DMT400036663	Potato	cytosol	22.88	28.35
PGSC0003DMT400024330	Potato	cytosol	24.66	26.91
PGSC0003DMT400023277	Potato	cytosol	27.4	25.84
PGSC0003DMT400043101	Potato	nucleus	24.93	25.74
PGSC0003DMT400071932	Potato	cytosol	3.42	22.52
PGSC0003DMT400011665	Potato	nucleus	26.16	17.13

Protein Annotations

EntrezGene:102597020	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0ZID7	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF00397	EnsemblPlantsGene:PGSC0003DMG401000517	PGSC:PGSC0003DMG401000517	EnsemblPlants:PGSC0003DMT400001391	ScanProsite:PS00039	ScanProsite:PS01159
PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045
SUPFAM:SSF52540	UniParc:UPI000295DF89	InterPro:WW_dom	InterPro:WW_dom_sf	RefSeq:XP_006338578.1	SEG:seg

Description

ATP-dependent RNA helicase DB10 [Source:PGSC_GENE;Acc:PGSC0003DMG401000517]

Coordinates

chr2:+:47190231..47199612

Molecular Weight (calculated)

79732.0 Da

IEP (calculated)

8.920

GRAVY (calculated)

-0.746

Length

730 amino acids

Sequence
(BLAST)

001: MAATATASST GPRYAPEDPT LPKPWKGLVD GKTGYLYFWN PETNTTQYER PVATSHVGAT HHKSSVSVSS SVEKPSQSEC PDRGDNRGTN GALSKLSSGE
101: GIQTARVSEL SRDETSAPKG YSAPAAASDI SPDAYRRQHE ISVTGGDVPP PFTSFEATGF PSEILREIHQ AGFPAPSPIQ AQSWPIALQG RDIVAVAKTG
201: SGKTLGFLLP GFFLLKQRRS NPQSGPTILV LSPTRELATQ IQDEAVKFGR SSKISCTCLY GGAPKGPQLR DLDRGVDIVV ATPGRLNDIL EMRRVRLDQV
301: SYLVLDEADR MLDMGFEPQI RKIVKEVPTR RQTLMYTATW PKEVRKIAAD LLVNPVQVNI GNVDELVANK SITQYIEVLS YMDKQKRLDQ ILRSQEPGSK
401: IIIFCSTKKM CDQLARNLTR PFGAAAIHGD KSQGERDHVL NQFRTGKSPV LVATDVAARG LDVKDIRVVV NYDFPTGIED YVHRIGRTGR AGATGEAYTF
501: FCDQDAKHGS DLIKVLEGAN QQVPTELRDM ASRGGGMGRA RRQWDSGSGG RGGRYDAGYG GRDGGRGGWE APSSEKSGRV YGSDSRDSDR YGDDSRDNDA
601: PASFHARSFH ETMMQASQRR DRSRSRSPNR GGSGWGDRKS RERSRSCSAE RFDRARLQVP EGGSFHEAMM SFSRSSAGDS REKVGGPCDN FQKDWEKERS
701: PPRSQGDGKS GDGPRANNGE EEGEGDETRA

Best Arabidopsis Sequence Match ( AT5G14610.5 )
(BLAST)

001: MLFFQEFGMA ATASAIRYAP EDPNLPKPWK GLVDSRTGYL YFWNPETNVT QYERPASSAP PKLAAIPVSS SVQTNQQSSS GFNSGKEDDK YGRGSDGPKS
101: DSGSRFNEAG RTGPISSNDA ASGLGNASSG GSSARGPPSS AAGNELSPEA YCRKHEITVS GGQVPPPLMS FEATGLPNEL LREVYSAGFS APSPIQAQSW
201: PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG
301: RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK
401: HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR
501: IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD
601: SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP RSFHEAMMMK NR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.