Factsheet for TraesCS3D01G131100.11

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G130200.4	Wheat	cytosol	98.01	98.46
TraesCS3B01G149300.8	Wheat	cytosol	97.55	98.0
HORVU3Hr1G024610.13	Barley	cytosol, plastid	95.41	88.12
Zm00001d008725_P003	Maize	cytosol	74.27	69.99
Zm00001d039673_P002	Maize	cytosol	74.43	69.33
OQU86230	Sorghum	cytosol	75.19	68.67
Os01t0172200-01	Rice	cytosol	77.95	67.06
Bra040699.1-P	Field mustard	cytosol	56.66	60.76
AT3G01540.2	Thale cress	cytosol	57.12	60.26
Bra001004.1-P	Field mustard	cytosol	58.19	59.75
Solyc12g035130.1.1	Tomato	nucleus	55.28	58.99
PGSC0003DMT400080614	Potato	nucleus	54.98	58.56
CDX91943	Canola	cytosol	56.97	55.94
CDY28671	Canola	cytosol	56.51	55.66
Bra023478.1-P	Field mustard	cytosol	57.12	55.18
CDX91036	Canola	cytosol	57.12	54.53
Solyc02g086660.2.1	Tomato	nucleus	58.81	54.39
CDX74304	Canola	cytosol	57.12	54.22
AT5G14610.1	Thale cress	cytosol	57.73	52.95
PGSC0003DMT400001391	Potato	cytosol	58.81	52.6
KRG93254	Soybean	endoplasmic reticulum	60.18	50.64
KRH56577	Soybean	nucleus	59.88	50.45
CDX85591	Canola	cytosol	57.12	49.6
TraesCS3D01G106000.1	Wheat	cytosol	37.21	48.99
VIT_14s0066g01020.t01	Wine grape	cytosol	59.57	45.08
TraesCS3D01G202500.3	Wheat	nucleus	55.74	44.99
TraesCS3D01G412400.2	Wheat	cytosol	38.13	43.3
TraesCS5D01G125100.1	Wheat	nucleus	27.11	33.15
TraesCS4D01G148700.1	Wheat	golgi	29.56	32.11
TraesCS5D01G465100.1	Wheat	cytosol	29.4	30.19
TraesCS3D01G100900.1	Wheat	cytosol	54.82	27.04
TraesCS5D01G159000.1	Wheat	cytosol	24.96	26.81
TraesCS4D01G184200.1	Wheat	mitochondrion	28.64	23.7
TraesCS2D01G149500.1	Wheat	nucleus	28.33	22.42
TraesCS4D01G041400.1	Wheat	nucleus	26.19	21.35
TraesCS7D01G294500.1	Wheat	nucleus	27.87	17.72

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490
SUPFAM:SSF51045	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G131100	EnsemblPlants:TraesCS3D01G131100.11	InterPro:WW_dom	InterPro:WW_dom_sf
TIGR:cd00079	TIGR:cd00201	TIGR:cd00268	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:91218758..91223090

Molecular Weight (calculated)

70788.1 Da

IEP (calculated)

9.813

GRAVY (calculated)

-0.586

Length

653 amino acids

Sequence
(BLAST)

001: MASAAPRYAP PDPTLPKPWR GLIDGTTGYL YFWNPETKAV TYDRPTGPPP PVAPAPAPAP APAPAPAPVQ QPQYHHDERA RPRDQPERHT ESGNRVQNAP
101: FADHKARNDP SFEQRFSAGA NPAPVPSTNP APQADNGNMS VDAYRKKHEI TIICPGREAP SPFMSFQSTG FPSEILREVQ QAGFKAPSPI QAQSWPIALK
201: GSDIVAVAKT GSGKTLGYLL PGFILVKNLR HNSRDGPTVL VLSPTRELAT QIQDEAIKFG RSSRISSTCL YGGAPKGPQL RDLERGADIV VATPGRLNDI
301: LEMGKVSLRQ VAYLVLDEAD RMLDMGFEPQ IRKIVKQVQP KRQTLMFTAT WPREVRKIAS DLLTNPVQVN IGNTDELVAN KSITQHVEVT TSFEKGRRLD
401: QILRQQEPGS KVIIFCSTKR MCDQLSRNLS RQYGASAIHG DKSQAERDSV LSEFRTGRCP ILVATDVAAR GLDVKDIRVV VNYDFPTGVE DYVHRIGRTG
501: RAGATGIAYT FFCDQDSKYA SDLVKILEGA NQNVSPELRA MVGRGGYGGR GPRRWASSND SYGGQGAYGS QTRDGPSFQS SYNNSSSGNQ YGGAPSFHSS
601: SSNNQTSGAA SLPASGGSGE GLSFHDRFYS GNSRGGDRAR SRSPPKAVGV SNW

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.