Factsheet for Zm00001d008725_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039673_P002	Maize	cytosol	87.88	86.88
TraesCS3A01G130200.4	Wheat	cytosol	70.27	74.92
TraesCS3B01G149300.8	Wheat	cytosol	69.84	74.46
TraesCS3D01G131100.11	Wheat	cytosol	69.99	74.27
Os01t0172200-01	Rice	cytosol	77.34	70.62
HORVU3Hr1G024610.13	Barley	cytosol, plastid	70.27	68.88
AT3G01540.2	Thale cress	cytosol	56.85	63.65
Bra040699.1-P	Field mustard	cytosol	55.41	63.05
Bra001004.1-P	Field mustard	cytosol	57.58	62.74
Solyc12g035130.1.1	Tomato	nucleus	53.97	61.11
PGSC0003DMT400080614	Potato	nucleus	53.97	61.01
CDX91943	Canola	cytosol	56.42	58.8
Bra023478.1-P	Field mustard	cytosol	56.71	58.14
CDY28671	Canola	cytosol	55.41	57.92
CDX91036	Canola	cytosol	56.71	57.46
CDX74304	Canola	cytosol	56.42	56.83
Solyc02g086660.2.1	Tomato	nucleus	57.14	56.09
AT5G14610.1	Thale cress	cytosol	57.29	55.76
PGSC0003DMT400001391	Potato	cytosol	56.85	53.97
KRH56577	Soybean	nucleus	59.16	52.9
KRG93254	Soybean	endoplasmic reticulum	59.16	52.84
CDX85591	Canola	cytosol	57.0	52.53
Zm00001d011155_P012	Maize	nucleus	54.98	48.66
Zm00001d044510_P002	Maize	mitochondrion	55.56	48.01
VIT_14s0066g01020.t01	Wine grape	cytosol	59.02	47.39
Zm00001d039452_P002	Maize	cytosol	34.2	42.86
Zm00001d042416_P002	Maize	extracellular, plasma membrane	35.5	38.56
Zm00001d019449_P004	Maize	nucleus	25.11	34.25
Zm00001d036897_P001	Maize	extracellular	29.58	33.39
Zm00001d048924_P001	Maize	plasma membrane	29.15	33.22
Zm00001d007755_P001	Maize	plastid	29.29	31.38
Zm00001d007757_P004	Maize	plastid	29.0	30.36
Zm00001d007719_P010	Maize	cytosol	54.4	27.86
Zm00001d048632_P001	Maize	cytosol	55.27	27.71
Zm00001d047502_P001	Maize	extracellular	24.53	27.51
Zm00001d047633_P002	Maize	nucleus	27.99	25.26
Zm00001d028898_P011	Maize	cytosol	27.71	24.94
Zm00001d033704_P007	Maize	extracellular	25.83	24.25
Zm00001d013453_P001	Maize	nucleus	25.4	23.98
Zm00001d024533_P001	Maize	nucleus	27.42	17.84

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6FEW5	ProteinID:AQK90493.1	ProteinID:AQK90504.1
ProteinID:AQK90505.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI0008424193
InterPro:WW_dom	InterPro:WW_dom_sf	EnsemblPlantsGene:Zm00001d008725	EnsemblPlants:Zm00001d008725_P003	EnsemblPlants:Zm00001d008725_T003	SEG:seg

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr8:-:17921480..17928377

Molecular Weight (calculated)

75708.4 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.579

Length

693 amino acids

Sequence
(BLAST)

001: MASSASAPAS TGPRYAPPDP TLPKPWRGLI DGNTGYLYFW NPETKVTQYE RPVAAVPAPQ SQPLVYSRPD DVPRSSAPAE QRSEAAVSRP QFVPPSDNRT
101: RIDHSESSSA SGVNLSQSAL STNQVSQYAN GSQMSTEAYR AKHEITIVGN EAPAPFMTFQ STGFPSEILR EVLQAGFSAP TPIQAQSWPI ALRGRDIVAV
201: AKTGSGKTLG YLLPGFILLK RLQHNSREGP TVLVLSPTRE LATQIQDEAI KFGRSSRISS TCLYGGAPKG PQLRELERGA DIVVATPGRL NDILEMNRVS
301: LHQVSYLVLD EADRMLDMGF EPQIRKIVKQ IPPKRQTLMY TATWPREVRK IASDLLANPV QVNIGNTDQL VANKSITQHV EVIPHMEKSR RLDQILRSQD
401: PGSKSIIFCS TKRMCDQLAR NLSRQYRASA IHGDKSQAER DSVLNDFRSG RCPVLVATDV AARGLDIKDI SFHLTIFTMS SHRVVVNYDF PTGVEDYVHR
501: IGRTGRAGAT GSAYTFFGDQ DSKYASDLVK ILEGANQSVP PQLKEMALRG GYGGRSRRWA SSDDSYGGQG YGAKRSTDSF NNNNFGNQAG GGSSFHSSHK
601: ESSISSLYNS SSGGQFGDTT SFHGSFDNSV RNNQTGDNAS FPPSSSNNQA GDGLSFHERF YGSRGRDQSR TSNDGFRARS RSPPGKPVEV SNW

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.