Factsheet for Zm00001d013453_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033704_P007	Maize	extracellular	96.87	96.34
TraesCS4A01G270200.1	Wheat	nucleus	88.96	89.82
TraesCS4B01G043900.1	Wheat	nucleus	88.96	89.57
Os03t0708600-02	Rice	nucleus	88.96	88.72
KXG37746	Sorghum	nucleus	96.32	87.5
HORVU4Hr1G007110.17	Barley	mitochondrion	89.1	84.94
GSMUA_Achr3P01410_001	Banana	nucleus	59.4	82.73
TraesCS4D01G041400.1	Wheat	nucleus	89.51	82.02
CDX84672	Canola	cytosol	47.82	78.52
PGSC0003DMT400043101	Potato	nucleus	75.61	78.5
KRH01937	Soybean	nucleus	75.48	78.47
KRH51212	Soybean	nucleus	74.93	78.46
CDY53786	Canola	nucleus	62.81	78.14
VIT_09s0054g01810.t01	Wine grape	cytosol	74.8	77.43
VIT_03s0038g00010.t01	Wine grape	cytosol	74.93	77.25
Solyc02g081290.2.1	Tomato	nucleus	68.53	77.03
TraesCS6B01G364400.1	Wheat	nucleus, plastid	67.98	76.89
HORVU6Hr1G080730.2	Barley	cytosol	34.2	76.76
TraesCS6B01G364300.1	Wheat	nucleus, plastid	67.85	76.73
Bra021872.1-P	Field mustard	nucleus	68.8	76.63
CDY37696	Canola	nucleus	60.63	75.42
AT2G33730.1	Thale cress	nucleus	73.98	74.08
CDX79541	Canola	nucleus	62.81	73.29
Solyc02g068190.1.1	Tomato	cytosol, nucleus	65.4	72.51
PGSC0003DMT400024330	Potato	cytosol	66.08	72.5
Zm00001d019449_P004	Maize	nucleus	22.89	33.07
Zm00001d039452_P002	Maize	cytosol	24.39	32.37
Zm00001d036897_P001	Maize	extracellular	25.2	30.13
Zm00001d048924_P001	Maize	plasma membrane	24.93	30.1
Zm00001d007755_P001	Maize	plastid	25.89	29.37
Zm00001d007757_P004	Maize	plastid	25.75	28.55
Zm00001d047502_P001	Maize	extracellular	23.43	27.83
Zm00001d042416_P002	Maize	extracellular, plasma membrane	23.84	27.43
Zm00001d028898_P011	Maize	cytosol	26.84	25.58
Zm00001d008725_P003	Maize	cytosol	23.98	25.4
Zm00001d047633_P002	Maize	nucleus	26.43	25.26
Zm00001d039673_P002	Maize	cytosol	23.3	24.39
Zm00001d044510_P002	Maize	mitochondrion	25.34	23.19
Zm00001d011155_P012	Maize	nucleus	24.39	22.86
Zm00001d024533_P001	Maize	nucleus	27.79	19.15
Zm00001d007719_P010	Maize	cytosol	24.8	13.45
Zm00001d048632_P001	Maize	cytosol	24.8	13.17

Protein Annotations

EntrezGene:100281521	MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ProteinID:AQK63563.1	EMBL:BT061867	UniProt:C0HHR1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001948563
EnsemblPlantsGene:Zm00001d013453	EnsemblPlants:Zm00001d013453_P001	EnsemblPlants:Zm00001d013453_T001	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 21

Coordinates

chr5:+:11966175..11968379

Molecular Weight (calculated)

84279.6 Da

IEP (calculated)

9.390

GRAVY (calculated)

-0.930

Length

734 amino acids

Sequence
(BLAST)

001: MKRSADAMTE PVKPVFLTKA ERERLALERR QAAVSDQRRT ALDLIQSLPR PPPPPTSGGP PPSGSNPARR DSSNSNRDSD RDRDRDQDRE RRRDDDSRRD
101: RYRDRDRDRD RDRDDSSRRD RDRDRRDRDR DRDRDRDRDR GDRERDRLEK IAEREREKEL DAIKEQYLGS KKPKKRVIKP SEKFRFSFDW ENTEDTSRDM
201: NALYQSPHEA RLLFGRGFLA GIDRREQKKA AAVHEKETRA ELRRKAGVED RPEDDAVDKK KAAAAEIYDA FDMRVDRHWS EKTLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRKWSESKL GTELLRAIDK AGYEKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLSYITRLPP ISEENEAEGP YAVVMAPTRE
401: LAQQIEEETV KFATYLGLKV VSIVGGQSIE EQGFKIRQGC EIVIATPGRL LDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVVGVLDA MPSSNLKPEN
501: EDEELDEKRI YRTTYMFSAT MPPAVERLAR KYLRNPVVVT IGTAGKATDL ITQNVIMVKE SEKMPRLQKI LTDLGDKTAI VFCNTKKTAD MRAKDLDKAG
601: FRVTTLHGGK SQDQREISLD GFRNRRFNVL VATDVAGRGI DIPDVAHVIN YEMPSSIDTY THRIGRTGRA GKKGVASSFL TYENTDIFFD LKQMLMQSNS
701: PVPPELARHE ASKFKPGSIP DRPPRRNDTV FANH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.