Factsheet for Solyc02g081290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043101	Potato	nucleus	98.93	91.37
KRH51212	Soybean	nucleus	82.39	76.75
VIT_03s0038g00010.t01	Wine grape	cytosol	83.31	76.4
KRH01937	Soybean	nucleus	82.39	76.2
VIT_09s0054g01810.t01	Wine grape	cytosol	82.7	76.16
Solyc02g068190.1.1	Tomato	cytosol, nucleus	75.96	74.92
GSMUA_Achr3P01410_001	Banana	nucleus	58.65	72.68
Bra021872.1-P	Field mustard	nucleus	71.98	71.32
AT2G33730.1	Thale cress	nucleus	79.48	70.8
CDY53786	Canola	nucleus	63.71	70.51
CDX84672	Canola	cytosol	48.09	70.25
TraesCS4A01G270200.1	Wheat	nucleus	76.72	68.91
Zm00001d033704_P007	Maize	extracellular	77.79	68.83
TraesCS4B01G043900.1	Wheat	nucleus	76.72	68.72
Zm00001d013453_P001	Maize	nucleus	77.03	68.53
CDX79541	Canola	nucleus	64.93	67.41
CDY37696	Canola	nucleus	60.8	67.29
HORVU1Hr1G083090.1	Barley	cytosol	25.57	66.53
Os03t0708600-02	Rice	nucleus	74.89	66.44
HORVU4Hr1G007110.17	Barley	mitochondrion	77.03	65.32
TraesCS6B01G364400.1	Wheat	nucleus, plastid	63.09	63.48
TraesCS6B01G364300.1	Wheat	nucleus, plastid	62.94	63.33
KXG37746	Sorghum	nucleus	78.25	63.24
HORVU6Hr1G080730.2	Barley	cytosol	31.39	62.69
TraesCS4D01G041400.1	Wheat	nucleus	76.88	62.67
TraesCS5B01G079300.1	Wheat	nucleus	67.38	61.2
TraesCS1B01G445500.1	Wheat	cytosol	41.81	59.74
OQU83862	Sorghum	nucleus	58.04	59.03
TraesCS1A01G415500.1	Wheat	cytosol	58.19	59.01
HORVU1Hr1G091050.3	Barley	nucleus	53.6	58.53
HORVU3Hr1G031710.1	Barley	mitochondrion	20.98	52.49
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	27.11	46.58
Solyc12g044860.1.1	Tomato	nucleus	21.9	29.85
Solyc03g052980.2.1	Tomato	nucleus	26.34	28.1
Solyc01g005960.2.1	Tomato	plastid	25.57	27.65
Solyc08g076200.2.1	Tomato	nucleus	22.21	26.22
Solyc09g015930.2.1	Tomato	plastid	22.36	26.16
Solyc06g068280.2.1	Tomato	extracellular, nucleus	23.74	26.05
Solyc03g117440.2.1	Tomato	cytosol, nucleus	23.58	25.88
Solyc12g035130.1.1	Tomato	nucleus	23.28	24.84
Solyc03g112350.2.1	Tomato	nucleus	23.74	23.81
Solyc02g086660.2.1	Tomato	nucleus	24.66	22.8
Solyc01g079330.2.1	Tomato	nucleus	24.2	20.41
Solyc12g098700.1.1	Tomato	nucleus	26.95	15.34
Solyc01g057760.2.1	Tomato	nucleus	23.43	12.53

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000375
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005682
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:K4B9Z9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g081290.2
EnsemblPlants:Solyc02g081290.2.1	UniParc:UPI000276777E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:45312793..45315265

Molecular Weight (calculated)

76091.1 Da

IEP (calculated)

9.311

GRAVY (calculated)

-1.019

Length

653 amino acids

Sequence
(BLAST)

001: MSRSVDELGT TKPDPTKKPV FLTKAQREQL ALQRRHDEIA EQKRRAEQLL QQQGNNRPSS TDNDHERDHR DRDSRGDHHR SRDRDRDRDR DRDRERERES
101: RDREVERRKR ERERDEEVKE RERARLDKLA EREREKELDA IKEQYLGSKK PKKRVIKPSE KFRFSFDWEN TEDTSRDMNA LYQNPHEARL LFGRGFRAGM
201: DRREQKKLAA KNERELREEI WKKDGVEESA VEAAALKKKE QDADMYDTFD MRVDRHWSDK KLEEMTERDW RIFREDHNIS YKGSRIPRPM RNWVESKLTT
301: ELLKAVDRAG YKKPSPIQMA AIPLGLQQRD VIGVAETGSV VSIVGGQSIE EQGFRIRQGC EVVIATPGRL LDCLERRYCV LNQCNYVVLD EADRMIDMGF
401: EPQVVGVLDA MPSSNMKPEN EDEELDEKRI YRTTYMFSAT MPPAVERLAR KYLRNPVVVT IGTAGKTTDL ITQHVFMVKE SEKMYKLQKL LDELGDKTAI
501: VFINTKKQAD FVAKNLDKNG YRVTTLHGGK SQEQREISLE GFRTKRYNVL VATDVAGRGI DIPDVAHVIN FDMPNNIEAY THRIGRTGRA GKTGVATTFL
601: TMQDTEVFYD LKQMLTQSNS PVPPELARHE ASKFKPGSIP DRPPRRNDTV FVH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.