Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011665 | Potato | nucleus | 95.38 | 98.12 |
| CDY72529 | Canola | cytosol | 40.63 | 74.8 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 73.23 | 73.23 |
| KRH77709 | Soybean | nucleus | 67.39 | 70.02 |
| KRH27757 | Soybean | nucleus | 67.22 | 69.65 |
| AT3G09620.2 | Thale cress | nucleus | 58.59 | 67.88 |
| CDY31513 | Canola | nucleus | 64.17 | 66.55 |
| Bra025856.1-P | Field mustard | nucleus | 67.39 | 66.01 |
| AT1G20920.3 | Thale cress | nucleus | 66.96 | 65.87 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 59.72 | 65.3 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 59.72 | 64.26 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 46.21 | 64.24 |
| Zm00001d024533_P001 | Maize | nucleus | 59.63 | 64.23 |
| EES14596 | Sorghum | nucleus | 59.11 | 63.84 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 58.67 | 63.31 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 59.11 | 63.25 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 56.58 | 63.19 |
| CDY44720 | Canola | nucleus | 46.99 | 62.38 |
| CDY41597 | Canola | nucleus | 41.59 | 61.71 |
| Bra029779.1-P | Field mustard | nucleus | 47.52 | 61.44 |
| OQU79814 | Sorghum | nucleus | 52.31 | 60.79 |
| GSMUA_Achr10P... | Banana | cytosol | 52.57 | 60.24 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 50.48 | 56.93 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 48.13 | 54.17 |
| Solyc12g044860.1.1 | Tomato | nucleus | 17.79 | 42.59 |
| Solyc01g079330.2.1 | Tomato | nucleus | 24.67 | 36.56 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 17.79 | 34.29 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 17.44 | 33.61 |
| Solyc03g112350.2.1 | Tomato | nucleus | 18.83 | 33.18 |
| Solyc01g005960.2.1 | Tomato | plastid | 17.35 | 32.95 |
| Solyc09g015930.2.1 | Tomato | plastid | 15.78 | 32.44 |
| Solyc08g076200.2.1 | Tomato | nucleus | 15.34 | 31.83 |
| Solyc03g052980.2.1 | Tomato | nucleus | 16.74 | 31.37 |
| Solyc12g035130.1.1 | Tomato | nucleus | 15.34 | 28.76 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 16.04 | 27.79 |
| Solyc02g086660.2.1 | Tomato | nucleus | 16.74 | 27.2 |
| Solyc02g081290.2.1 | Tomato | nucleus | 15.34 | 26.95 |
| Solyc01g057760.2.1 | Tomato | nucleus | 17.09 | 16.05 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| UniProt:K4DHP3 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc12g098700.1 | EnsemblPlants:Solyc12g098700.1.1 | UniParc:UPI000276A391 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:66119820..66123263
Molecular Weight (calculated)
130898.0 Da
IEP (calculated)
6.272
GRAVY (calculated)
-1.070
Length
1147 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEELKHKSKR EDESKKRHRD KEDRDREKRD REHHHRDKKD REREKSSRYE REKSADRDRD RDRAKHKDRH SRGDKEREKS SKVRDDDERP RDKVKEREKD
0101: KEDREERERE KEREREKERE REREREKERE REREREKERE REREREKERE RERKRDRERR EREKERNREK DRHREVYEKG SDDEVDTKDR ERKRRKRDND
0201: DHHKERDRER SSKPNNRLRE ESTDEVSAEK DQKSREEDLA EEQRKLDDEM EKRRRRVQEW QELKRKKEES ERETLGVDAG AEEPKLGKTW TLDGESDDED
0301: AEGKTGMDID RDDTGKVMDD ENGAGKVVSS SIGSDSPVIQ NGGDGLVDDD EIDPLDAFMN DMVLPEVEKL NKSVVNSLDG ENSSMKEKNG PRKEEKPKMS
0401: MKKTMGRIIP GEDSDSDYGN VENDEDPLEE EDDEEFMKRV KKTKAEKLSL VDHSKIEYPP FRKNFYIEVK EISRISAEEV SAYRKQLELK IHGKDVPKPI
0501: KTWHQTGLSS KMLDTIKKLN YEKPMSIQAQ ALPVIMSGRD CIGIAKTGSG KTLAFVLPML RHIKDQPPLM SGDGPIGLIM APTRELVQQI HSDIKKFARV
0601: MGLTCVPVYG GSGVAQQISE LKRGAEIVVC TPGRMIDILC TSGGKITNLR RVTYLVMDEA DRMFDMGFEP QITRIVQNTR PDRQTVLFSA TFPRQVEILA
0701: RKVLNKPVEI QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWYEKGK ILIFVHTQEK CDALFKDLLK HGYPCLSLHG AKDQTDREST ISDFKSNVCN
0801: LLIATSIAAR GLDVKELELV INYDVPNHYE DYVHRVGRTG RAGKKGCAIT FISEDDARYA PDLLKALQLS EQVVPDDLKA LADSFMAKVN QGLEQAHGTG
0901: YGGSGFKFNE EEDEVRRAAK KAQAKEYGFE EDKSDSEDED EGIRKAGGDL SQQAALAQAA ALVAASKASM ASAATPVSAG HLLPNGGLPV ALPGVLGINI
1001: PGATAVAVGN GLSVGSNDVT ARATALAAAL NLQHNLAKIQ ADAMPEHYEA ELEINDFPQN ARWKVTHKET LGPISEWTGA AITTRGQYVP PGKVPGFGER
1101: KLYLFIEGPT EQSVKRAKAE LKRVLEDITM QASSLPGSAQ PGRYSVV
0101: KEDREERERE KEREREKERE REREREKERE REREREKERE REREREKERE RERKRDRERR EREKERNREK DRHREVYEKG SDDEVDTKDR ERKRRKRDND
0201: DHHKERDRER SSKPNNRLRE ESTDEVSAEK DQKSREEDLA EEQRKLDDEM EKRRRRVQEW QELKRKKEES ERETLGVDAG AEEPKLGKTW TLDGESDDED
0301: AEGKTGMDID RDDTGKVMDD ENGAGKVVSS SIGSDSPVIQ NGGDGLVDDD EIDPLDAFMN DMVLPEVEKL NKSVVNSLDG ENSSMKEKNG PRKEEKPKMS
0401: MKKTMGRIIP GEDSDSDYGN VENDEDPLEE EDDEEFMKRV KKTKAEKLSL VDHSKIEYPP FRKNFYIEVK EISRISAEEV SAYRKQLELK IHGKDVPKPI
0501: KTWHQTGLSS KMLDTIKKLN YEKPMSIQAQ ALPVIMSGRD CIGIAKTGSG KTLAFVLPML RHIKDQPPLM SGDGPIGLIM APTRELVQQI HSDIKKFARV
0601: MGLTCVPVYG GSGVAQQISE LKRGAEIVVC TPGRMIDILC TSGGKITNLR RVTYLVMDEA DRMFDMGFEP QITRIVQNTR PDRQTVLFSA TFPRQVEILA
0701: RKVLNKPVEI QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWYEKGK ILIFVHTQEK CDALFKDLLK HGYPCLSLHG AKDQTDREST ISDFKSNVCN
0801: LLIATSIAAR GLDVKELELV INYDVPNHYE DYVHRVGRTG RAGKKGCAIT FISEDDARYA PDLLKALQLS EQVVPDDLKA LADSFMAKVN QGLEQAHGTG
0901: YGGSGFKFNE EEDEVRRAAK KAQAKEYGFE EDKSDSEDED EGIRKAGGDL SQQAALAQAA ALVAASKASM ASAATPVSAG HLLPNGGLPV ALPGVLGINI
1001: PGATAVAVGN GLSVGSNDVT ARATALAAAL NLQHNLAKIQ ADAMPEHYEA ELEINDFPQN ARWKVTHKET LGPISEWTGA AITTRGQYVP PGKVPGFGER
1101: KLYLFIEGPT EQSVKRAKAE LKRVLEDITM QASSLPGSAQ PGRYSVV
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.