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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025856.1-P Field mustard nucleus 98.19 92.74
CDY72529 Canola cytosol 50.99 90.53
AT1G20920.3 Thale cress nucleus 87.25 82.76
VIT_03s0038g04130.t01 Wine grape nucleus 68.26 65.82
KRH77709 Soybean nucleus 64.83 64.95
PGSC0003DMT400011665 Potato nucleus 65.19 64.66
CDY41597 Canola nucleus 45.03 64.42
KRH27757 Soybean nucleus 64.29 64.23
Solyc12g098700.1.1 Tomato nucleus 66.55 64.17
CDY44720 Canola nucleus 49.82 63.77
TraesCS2D01G149500.1 Wheat nucleus 46.56 62.42
Os08t0159900-01 Rice extracellular, nucleus 58.14 61.3
EES14596 Sorghum nucleus 58.77 61.21
Zm00001d024533_P001 Maize nucleus 58.77 61.03
HORVU0Hr1G020490.1 Barley nucleus 57.59 59.76
TraesCS7D01G294500.1 Wheat nucleus 55.24 59.49
TraesCS7B01G187000.1 Wheat nucleus 57.05 59.36
OQU79814 Sorghum nucleus 52.71 59.07
TraesCS7A01G298800.3 Wheat nucleus 57.23 59.05
GSMUA_Achr10P... Banana cytosol 51.27 56.64
TraesCS2B01G170700.1 Wheat nucleus 50.72 55.16
HORVU2Hr1G025790.1 Barley nucleus 48.55 52.7
CDY10596 Canola nucleus 17.27 38.28
CDY02459 Canola cytosol 17.18 38.08
CDX83333 Canola nucleus 21.88 37.99
CDY47978 Canola plastid 13.92 36.84
CDY37796 Canola cytosol 23.87 35.97
CDY16735 Canola cytosol 19.08 35.7
CDX80096 Canola cytosol 23.42 35.58
CDY48128 Canola cytosol 18.9 35.19
CDX95719 Canola cytosol 23.24 34.97
CDY61276 Canola cytosol 16.27 34.68
CDX87315 Canola cytosol 16.18 34.56
CDX98304 Canola cytosol, plastid 14.38 34.49
CDX84672 Canola cytosol 13.92 34.45
CDY39973 Canola cytosol 16.09 34.36
CDY38671 Canola cytosol 15.91 33.91
CDX67949 Canola cytosol 16.27 33.09
CDY53786 Canola nucleus 16.91 31.69
CDY14843 Canola cytosol, plastid 16.91 30.56
CDX71948 Canola cytosol 16.46 30.49
CDY06034 Canola cytosol 15.73 30.26
CDY66221 Canola nucleus 14.65 30.22
CDY41747 Canola nucleus 14.74 30.19
CDX67752 Canola cytosol 17.27 30.17
CDY65864 Canola nucleus 14.56 30.15
CDY49232 Canola cytosol 16.91 29.92
CDX67749 Canola cytosol 16.27 29.9
CDX98301 Canola cytosol 16.09 29.62
CDX71944 Canola cytosol 16.82 29.34
CDY37696 Canola nucleus 15.64 29.32
CDX84112 Canola nucleus 7.59 28.0
CDX79541 Canola nucleus 15.82 27.82
CDY28671 Canola cytosol 15.82 26.4
CDX91943 Canola cytosol 15.73 26.17
CDX91036 Canola cytosol 16.09 26.02
CDX74304 Canola cytosol 15.73 25.29
CDX88990 Canola cytosol, plastid 12.75 25.27
CDX79384 Canola cytosol 8.77 24.87
CDX85591 Canola cytosol 16.27 23.94
CDY08048 Canola nucleus 16.73 21.02
CDX74101 Canola cytosol 16.64 21.0
CDY00570 Canola nucleus 9.22 16.8
CDX91039 Canola cytosol 1.54 9.71
CDX91037 Canola cytosol 1.54 9.71
Protein Annotations
MapMan:16.4.7.1.2Gene3D:3.40.50.300GO:A0A078H3Y2UniProt:A0A078H3Y2EnsemblPlants:CDY31513ProteinID:CDY31513
ProteinID:CDY31513.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0005488GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00047818001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650
InterPro:IPR014001InterPro:IPR014014InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039
PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF25InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI0004EF00F7SEG:seg
Description
BnaC05g16220DBnaC05g16220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Y2]
Coordinates
chrLK032273:+:449629..454179
Molecular Weight (calculated)
126457.0 Da
IEP (calculated)
5.885
GRAVY (calculated)
-1.157
Length
1106 amino acids
Sequence
(BLAST)
0001: MEVVKSNKER KKERSSDKRR EKDRRKRRSE RVKSSDDSED EYDRGDDDDE ERERRKEKER RRRDKERGKR RSERRKSSDS EDEDEEDGGR DKRRVKDKER
0101: GHREHRDKDR KRDREREERK EKEREREREK DRVRRERERE EREKERLKER ERREREREDG ERDRREREKE RSRRNRERGR SREDGHEESD DDVKRELKRR
0201: RRESGERKEK EREKSVGRSS RHGDDNGDSP RRKSVEEDDE KKEKKTREEE LEEEQKKLDE EVEKRRRRVQ EWQELKRKKE EAESESKGDT DDKELKAGKA
0301: WTLDGESDDE EGHPEENPET EMDVDGETKP GNGADAKMVE AENEVAVTVS EVGGDGAADE EEIDPLDAFM NAMVLPEVEK LSSSTPPAIE DSILVTKNNG
0401: KKSDHQPKKG FNKSLGRIMQ GEDSDSDYSE PKDDDDPSLE EDDEEFMKRV KKTKAEKLAL VDHSKIEYEP FRKNFYIEVK EISRMTQEEV NAYRKEFELK
0501: VHGKDVPRPI KSWHQTGLTS KILDTMNKLK YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGEGPIGLVM APTRELVQQI
0601: HSDIKKFSKA LGIRCVPVYG GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PDRQTVLFSA
0701: TFPRQVETLA RKVLNKPIEI QVGGRSVVNK DITQLVEVRP ESERFLRLLE LLGEWYEKGK ILVFQSDRES TISDFKSNVC NILIATSVAA RGLDVKDLEL
0801: VVNYDAPNHY EDYVHRVGRT GRAGRKGCAV TFISEDDAKY APDLVKALEL SEQPIPDDLK AIADGFMAKV RQGTEQAHGT GYGGSGFKFN EEEEEVRKAA
0901: KKAQAKEYGF EEDKSDSEDE NDVVRKAGTV AAIAAAAKAN AAAMNPPVTT NQLLPNGGGL TSLPGTLPVT IPVLPNDGAG RAAAMVAAIN LQHNLAKIQA
1001: DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISDWTGAA ITTRGQFYPP GRILGPGERK LYLFIEGPTE KSVKTAKVEL KRVLEDITNQ AMSLPGGSQA
1101: GKYSVI
Best Arabidopsis Sequence Match ( AT1G20920.4 )
(BLAST)
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.