Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra025856.1-P | Field mustard | nucleus | 98.19 | 92.74 |
CDY72529 | Canola | cytosol | 50.99 | 90.53 |
AT1G20920.3 | Thale cress | nucleus | 87.25 | 82.76 |
VIT_03s0038g04130.t01 | Wine grape | nucleus | 68.26 | 65.82 |
KRH77709 | Soybean | nucleus | 64.83 | 64.95 |
PGSC0003DMT400011665 | Potato | nucleus | 65.19 | 64.66 |
CDY41597 | Canola | nucleus | 45.03 | 64.42 |
KRH27757 | Soybean | nucleus | 64.29 | 64.23 |
Solyc12g098700.1.1 | Tomato | nucleus | 66.55 | 64.17 |
CDY44720 | Canola | nucleus | 49.82 | 63.77 |
TraesCS2D01G149500.1 | Wheat | nucleus | 46.56 | 62.42 |
Os08t0159900-01 | Rice | extracellular, nucleus | 58.14 | 61.3 |
EES14596 | Sorghum | nucleus | 58.77 | 61.21 |
Zm00001d024533_P001 | Maize | nucleus | 58.77 | 61.03 |
HORVU0Hr1G020490.1 | Barley | nucleus | 57.59 | 59.76 |
TraesCS7D01G294500.1 | Wheat | nucleus | 55.24 | 59.49 |
TraesCS7B01G187000.1 | Wheat | nucleus | 57.05 | 59.36 |
OQU79814 | Sorghum | nucleus | 52.71 | 59.07 |
TraesCS7A01G298800.3 | Wheat | nucleus | 57.23 | 59.05 |
GSMUA_Achr10P... | Banana | cytosol | 51.27 | 56.64 |
TraesCS2B01G170700.1 | Wheat | nucleus | 50.72 | 55.16 |
HORVU2Hr1G025790.1 | Barley | nucleus | 48.55 | 52.7 |
CDY10596 | Canola | nucleus | 17.27 | 38.28 |
CDY02459 | Canola | cytosol | 17.18 | 38.08 |
CDX83333 | Canola | nucleus | 21.88 | 37.99 |
CDY47978 | Canola | plastid | 13.92 | 36.84 |
CDY37796 | Canola | cytosol | 23.87 | 35.97 |
CDY16735 | Canola | cytosol | 19.08 | 35.7 |
CDX80096 | Canola | cytosol | 23.42 | 35.58 |
CDY48128 | Canola | cytosol | 18.9 | 35.19 |
CDX95719 | Canola | cytosol | 23.24 | 34.97 |
CDY61276 | Canola | cytosol | 16.27 | 34.68 |
CDX87315 | Canola | cytosol | 16.18 | 34.56 |
CDX98304 | Canola | cytosol, plastid | 14.38 | 34.49 |
CDX84672 | Canola | cytosol | 13.92 | 34.45 |
CDY39973 | Canola | cytosol | 16.09 | 34.36 |
CDY38671 | Canola | cytosol | 15.91 | 33.91 |
CDX67949 | Canola | cytosol | 16.27 | 33.09 |
CDY53786 | Canola | nucleus | 16.91 | 31.69 |
CDY14843 | Canola | cytosol, plastid | 16.91 | 30.56 |
CDX71948 | Canola | cytosol | 16.46 | 30.49 |
CDY06034 | Canola | cytosol | 15.73 | 30.26 |
CDY66221 | Canola | nucleus | 14.65 | 30.22 |
CDY41747 | Canola | nucleus | 14.74 | 30.19 |
CDX67752 | Canola | cytosol | 17.27 | 30.17 |
CDY65864 | Canola | nucleus | 14.56 | 30.15 |
CDY49232 | Canola | cytosol | 16.91 | 29.92 |
CDX67749 | Canola | cytosol | 16.27 | 29.9 |
CDX98301 | Canola | cytosol | 16.09 | 29.62 |
CDX71944 | Canola | cytosol | 16.82 | 29.34 |
CDY37696 | Canola | nucleus | 15.64 | 29.32 |
CDX84112 | Canola | nucleus | 7.59 | 28.0 |
CDX79541 | Canola | nucleus | 15.82 | 27.82 |
CDY28671 | Canola | cytosol | 15.82 | 26.4 |
CDX91943 | Canola | cytosol | 15.73 | 26.17 |
CDX91036 | Canola | cytosol | 16.09 | 26.02 |
CDX74304 | Canola | cytosol | 15.73 | 25.29 |
CDX88990 | Canola | cytosol, plastid | 12.75 | 25.27 |
CDX79384 | Canola | cytosol | 8.77 | 24.87 |
CDX85591 | Canola | cytosol | 16.27 | 23.94 |
CDY08048 | Canola | nucleus | 16.73 | 21.02 |
CDX74101 | Canola | cytosol | 16.64 | 21.0 |
CDY00570 | Canola | nucleus | 9.22 | 16.8 |
CDX91039 | Canola | cytosol | 1.54 | 9.71 |
CDX91037 | Canola | cytosol | 1.54 | 9.71 |
Protein Annotations
MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | GO:A0A078H3Y2 | UniProt:A0A078H3Y2 | EnsemblPlants:CDY31513 | ProteinID:CDY31513 |
ProteinID:CDY31513.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00047818001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS |
InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF00F7 | SEG:seg |
Description
BnaC05g16220DBnaC05g16220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Y2]
Coordinates
chrLK032273:+:449629..454179
Molecular Weight (calculated)
126457.0 Da
IEP (calculated)
5.885
GRAVY (calculated)
-1.157
Length
1106 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEVVKSNKER KKERSSDKRR EKDRRKRRSE RVKSSDDSED EYDRGDDDDE ERERRKEKER RRRDKERGKR RSERRKSSDS EDEDEEDGGR DKRRVKDKER
0101: GHREHRDKDR KRDREREERK EKEREREREK DRVRRERERE EREKERLKER ERREREREDG ERDRREREKE RSRRNRERGR SREDGHEESD DDVKRELKRR
0201: RRESGERKEK EREKSVGRSS RHGDDNGDSP RRKSVEEDDE KKEKKTREEE LEEEQKKLDE EVEKRRRRVQ EWQELKRKKE EAESESKGDT DDKELKAGKA
0301: WTLDGESDDE EGHPEENPET EMDVDGETKP GNGADAKMVE AENEVAVTVS EVGGDGAADE EEIDPLDAFM NAMVLPEVEK LSSSTPPAIE DSILVTKNNG
0401: KKSDHQPKKG FNKSLGRIMQ GEDSDSDYSE PKDDDDPSLE EDDEEFMKRV KKTKAEKLAL VDHSKIEYEP FRKNFYIEVK EISRMTQEEV NAYRKEFELK
0501: VHGKDVPRPI KSWHQTGLTS KILDTMNKLK YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGEGPIGLVM APTRELVQQI
0601: HSDIKKFSKA LGIRCVPVYG GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PDRQTVLFSA
0701: TFPRQVETLA RKVLNKPIEI QVGGRSVVNK DITQLVEVRP ESERFLRLLE LLGEWYEKGK ILVFQSDRES TISDFKSNVC NILIATSVAA RGLDVKDLEL
0801: VVNYDAPNHY EDYVHRVGRT GRAGRKGCAV TFISEDDAKY APDLVKALEL SEQPIPDDLK AIADGFMAKV RQGTEQAHGT GYGGSGFKFN EEEEEVRKAA
0901: KKAQAKEYGF EEDKSDSEDE NDVVRKAGTV AAIAAAAKAN AAAMNPPVTT NQLLPNGGGL TSLPGTLPVT IPVLPNDGAG RAAAMVAAIN LQHNLAKIQA
1001: DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISDWTGAA ITTRGQFYPP GRILGPGERK LYLFIEGPTE KSVKTAKVEL KRVLEDITNQ AMSLPGGSQA
1101: GKYSVI
0101: GHREHRDKDR KRDREREERK EKEREREREK DRVRRERERE EREKERLKER ERREREREDG ERDRREREKE RSRRNRERGR SREDGHEESD DDVKRELKRR
0201: RRESGERKEK EREKSVGRSS RHGDDNGDSP RRKSVEEDDE KKEKKTREEE LEEEQKKLDE EVEKRRRRVQ EWQELKRKKE EAESESKGDT DDKELKAGKA
0301: WTLDGESDDE EGHPEENPET EMDVDGETKP GNGADAKMVE AENEVAVTVS EVGGDGAADE EEIDPLDAFM NAMVLPEVEK LSSSTPPAIE DSILVTKNNG
0401: KKSDHQPKKG FNKSLGRIMQ GEDSDSDYSE PKDDDDPSLE EDDEEFMKRV KKTKAEKLAL VDHSKIEYEP FRKNFYIEVK EISRMTQEEV NAYRKEFELK
0501: VHGKDVPRPI KSWHQTGLTS KILDTMNKLK YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGEGPIGLVM APTRELVQQI
0601: HSDIKKFSKA LGIRCVPVYG GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PDRQTVLFSA
0701: TFPRQVETLA RKVLNKPIEI QVGGRSVVNK DITQLVEVRP ESERFLRLLE LLGEWYEKGK ILVFQSDRES TISDFKSNVC NILIATSVAA RGLDVKDLEL
0801: VVNYDAPNHY EDYVHRVGRT GRAGRKGCAV TFISEDDAKY APDLVKALEL SEQPIPDDLK AIADGFMAKV RQGTEQAHGT GYGGSGFKFN EEEEEVRKAA
0901: KKAQAKEYGF EEDKSDSEDE NDVVRKAGTV AAIAAAAKAN AAAMNPPVTT NQLLPNGGGL TSLPGTLPVT IPVLPNDGAG RAAAMVAAIN LQHNLAKIQA
1001: DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISDWTGAA ITTRGQFYPP GRILGPGERK LYLFIEGPTE KSVKTAKVEL KRVLEDITNQ AMSLPGGSQA
1101: GKYSVI
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.