Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G187000.1 | Wheat | nucleus | 97.95 | 98.78 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 93.84 | 97.96 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 95.15 | 95.68 |
| Zm00001d024533_P001 | Maize | nucleus | 81.06 | 81.6 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 78.54 | 80.27 |
| CDY72529 | Canola | cytosol | 41.42 | 71.27 |
| OQU79814 | Sorghum | nucleus | 64.83 | 70.42 |
| AT3G09620.2 | Thale cress | nucleus | 56.16 | 60.81 |
| KRH77709 | Soybean | nucleus | 62.03 | 60.24 |
| CDY44720 | Canola | nucleus | 48.41 | 60.07 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 64.18 | 59.98 |
| KRH27757 | Soybean | nucleus | 61.85 | 59.89 |
| PGSC0003DMT400011665 | Potato | nucleus | 61.94 | 59.55 |
| Solyc12g098700.1.1 | Tomato | nucleus | 63.25 | 59.11 |
| Bra029779.1-P | Field mustard | nucleus | 48.6 | 58.74 |
| CDY41597 | Canola | nucleus | 41.42 | 57.44 |
| CDY31513 | Canola | nucleus | 59.05 | 57.23 |
| AT1G20920.3 | Thale cress | nucleus | 61.85 | 56.86 |
| Bra025856.1-P | Field mustard | nucleus | 61.94 | 56.7 |
| GSMUA_Achr10P... | Banana | cytosol | 52.33 | 56.04 |
| TraesCS3A01G103700.1 | Wheat | cytosol | 19.5 | 42.14 |
| TraesCS3A01G416900.1 | Wheat | cytosol | 20.15 | 37.63 |
| TraesCS4A01G121700.1 | Wheat | mitochondrion | 25.37 | 35.46 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 16.88 | 33.83 |
| TraesCS5A01G454600.1 | Wheat | golgi | 18.0 | 30.35 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 16.42 | 30.19 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 18.19 | 30.0 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 19.68 | 29.02 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 17.26 | 28.73 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 17.54 | 28.57 |
| TraesCS4A01G141400.1 | Wheat | plastid | 16.79 | 27.44 |
| TraesCS7A01G374000.1 | Wheat | nucleus | 16.7 | 25.32 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 16.88 | 23.12 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 19.22 | 15.44 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS7A01G298800 | EnsemblPlants:TraesCS7A01G298800.3 |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7A:+:407296196..407299795
Molecular Weight (calculated)
121630.0 Da
IEP (calculated)
5.710
GRAVY (calculated)
-0.929
Length
1072 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGDDDRVT VSRHHQRDKD KDRDHSSSRR HRDKDRPSSR HHRDDRDGER ERDRDRDRHQ RDKERDREER KARERAEKER EKEEKREKER EREREREREE
0101: REMEKERERA RRREERDREK EKSRRREAVD EEENEDRDRD RKHRRRSLHR HHHRDVEPEE TPLTREEEED AEEVERRRQK KEEDMEAEQQ RLDDEMERRR
0201: RRVKEWQEKK RREQQQEDGA SGGAAAIEAD GGGKSGKKWT LDGEESDEED VKKLEENAGT GAMDVDLPSM DNGSNSGAGL EEDEIDPLDA FMDSMVLPVV
0301: AKLESATTAT ESVLADNAGG LNDKSVKDAT SNEDKKRQMM AIGRIMQGDD SDSDYDDANN GEAGSDDEDD AEFIKRVKKT KAEKLVIVDH SKIDYQPFRK
0401: NFYIEVKDIK NMPAEEAAAY RKLLELKVHG KDVPKPIKTW IQSGLTSKLL DTIKKLGFEK PMPIQAQALP VIMSGRDCIG VAKTGSGKTL AFVLPMLRHV
0501: KDQPPVVPGD GPIGLIMAPT RELVVQIYSD IKKFSKVLGI NCVPIYGGSG VAQQISELKR GAEIVVCTPG RMIDILCTSS GKITNLRRVT FLVLDEADRM
0601: FDMGFEPQIT RIVQNTRPDR QTVLFSATFP RQVEILARKV LTKPVEIQMG GRSVVNKDIT QLVEVRPESE RFFRLLELLG EWFANGKILV FVQSQDKCDS
0701: LLKELFQHGY PCLSLHGGKD QNDRESTLAD FKSNVCSLLI ATSVAARGLD VKDLELVVNY DVTNHYEDYV HRVGRTGRAG RKGCAVTFIS EEEERYAPDL
0801: VKALELSEQA VPEDLKALAD RFMSKVKQGT EQAHGTGYGG SGFKFNEEEE EARKSAKRAQ AREYGYEEDK SDSDSDDEGG VRKQGGDVAA QAIAAAQAAA
0901: ALAAARATSN AQQQVPATTA GSLLPLPVVP SQQNNEATQR ALDAAYNLQK NLARIQAHAV PEHYEAELEI NDFPQNARWK ITHKETLVPI QEWTGAAITT
1001: RGTFIPQGKI VGANERKLYL FIEGPNESSV KKAKAELKRV LEDCANQALN LPAYRGLQIT IQLLDFRYAT IF
0101: REMEKERERA RRREERDREK EKSRRREAVD EEENEDRDRD RKHRRRSLHR HHHRDVEPEE TPLTREEEED AEEVERRRQK KEEDMEAEQQ RLDDEMERRR
0201: RRVKEWQEKK RREQQQEDGA SGGAAAIEAD GGGKSGKKWT LDGEESDEED VKKLEENAGT GAMDVDLPSM DNGSNSGAGL EEDEIDPLDA FMDSMVLPVV
0301: AKLESATTAT ESVLADNAGG LNDKSVKDAT SNEDKKRQMM AIGRIMQGDD SDSDYDDANN GEAGSDDEDD AEFIKRVKKT KAEKLVIVDH SKIDYQPFRK
0401: NFYIEVKDIK NMPAEEAAAY RKLLELKVHG KDVPKPIKTW IQSGLTSKLL DTIKKLGFEK PMPIQAQALP VIMSGRDCIG VAKTGSGKTL AFVLPMLRHV
0501: KDQPPVVPGD GPIGLIMAPT RELVVQIYSD IKKFSKVLGI NCVPIYGGSG VAQQISELKR GAEIVVCTPG RMIDILCTSS GKITNLRRVT FLVLDEADRM
0601: FDMGFEPQIT RIVQNTRPDR QTVLFSATFP RQVEILARKV LTKPVEIQMG GRSVVNKDIT QLVEVRPESE RFFRLLELLG EWFANGKILV FVQSQDKCDS
0701: LLKELFQHGY PCLSLHGGKD QNDRESTLAD FKSNVCSLLI ATSVAARGLD VKDLELVVNY DVTNHYEDYV HRVGRTGRAG RKGCAVTFIS EEEERYAPDL
0801: VKALELSEQA VPEDLKALAD RFMSKVKQGT EQAHGTGYGG SGFKFNEEEE EARKSAKRAQ AREYGYEEDK SDSDSDDEGG VRKQGGDVAA QAIAAAQAAA
0901: ALAAARATSN AQQQVPATTA GSLLPLPVVP SQQNNEATQR ALDAAYNLQK NLARIQAHAV PEHYEAELEI NDFPQNARWK ITHKETLVPI QEWTGAAITT
1001: RGTFIPQGKI VGANERKLYL FIEGPNESSV KKAKAELKRV LEDCANQALN LPAYRGLQIT IQLLDFRYAT IF
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.