Factsheet for TraesCS5A01G114400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G125100.1	Wheat	nucleus	98.32	98.5
TraesCS5B01G120500.1	Wheat	nucleus	97.01	97.74
HORVU5Hr1G037290.3	Barley	nucleus	95.33	96.23
Zm00001d019449_P004	Maize	nucleus	78.69	82.87
Os07t0301200-01	Rice	cytosol	79.25	82.81
EER96257	Sorghum	cytosol	79.25	82.81
KRH39630	Soybean	nucleus	67.48	67.23
GSMUA_Achr11P...	Banana	nucleus	72.34	67.07
KRH74291	Soybean	nucleus	67.29	67.04
CDY65864	Canola	nucleus	65.61	65.73
CDY66221	Canola	nucleus	65.05	64.93
Bra023227.1-P	Field mustard	nucleus	65.42	64.46
AT1G31970.1	Thale cress	cytosol	64.67	64.43
CDY41747	Canola	nucleus	63.74	63.15
Solyc08g076200.2.1	Tomato	nucleus	64.86	62.75
Bra035518.1-P	Field mustard	nucleus	62.62	62.5
PGSC0003DMT400024026	Potato	nucleus	65.05	62.48
VIT_02s0109g00380.t01	Wine grape	cytosol	67.85	57.8
CDX84112	Canola	nucleus	27.85	49.67
TraesCS3A01G103700.1	Wheat	cytosol	37.2	40.12
TraesCS3A01G416900.1	Wheat	cytosol	38.69	36.06
TraesCS3A01G130200.4	Wheat	cytosol	33.08	27.23
TraesCS5A01G153700.1	Wheat	cytosol	28.97	26.59
TraesCS5A01G454600.1	Wheat	golgi	31.59	26.57
TraesCS1A01G415500.1	Wheat	cytosol	30.28	25.16
TraesCS4A01G141400.1	Wheat	plastid	30.65	25.0
TraesCS7A01G374000.1	Wheat	nucleus	31.78	24.05
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	29.53	24.01
TraesCS4A01G270200.1	Wheat	nucleus	30.65	22.56
TraesCS4A01G121700.1	Wheat	mitochondrion	32.34	22.56
TraesCS3A01G194200.1	Wheat	nucleus	32.71	22.35
TraesCS7A01G298800.3	Wheat	nucleus	33.83	16.88
TraesCS3A01G100200.1	Wheat	cytosol	34.39	13.79

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5A01G114400	EnsemblPlants:TraesCS5A01G114400.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:228886501..228893654

Molecular Weight (calculated)

58489.3 Da

IEP (calculated)

9.329

GRAVY (calculated)

-0.440

Length

535 amino acids

Sequence
(BLAST)

001: MDPKLRSTQE EPSNERKKDK KSKKKEKKPK SAAEAEAEEV AAEQEELSNK RKKDKKNKKD KKRKLAAEAE EAAAEEEAKS SKKRGVATEE PDQGGAVEKS
101: VAVTGKGFAD PKYAPLNSFA AAALPTQVLD CCKGFDRPSP IQALAWPYLL DGRDFIGIAA TGSGKTIAFG VPALMHVRKK LSEKGAKKGL PRCLMLAPTR
201: ELAQQIADVL TEAGAPCGIN SVCLYGGTSK GPQISSLKSG VEIVIGTPGR MKDLIEMGVC RLNEVSFVVL DEADRMLDMG FEPEVRAILS QTSSVRQMVM
301: FSATWPFAVH QLAQEFMDPN PIKVVVGSED LAANHDVMQI VEVLDDRARD SRLVALLDKY HRAQSNRVLV FVLYKKEAGR VEAMLNKRGW KAVSVHGDKA
401: QHDRTKALSL FKEGKCPLMI ATDVASRGLD IPDVEVVINY SFPLTTEDYV HRIGRTGRAG KKGVAHTFFT QADKGLAGEL VNVLREADQV VPPALTKFGT
501: HVKKKESKIY GSHFKEITAD APKSTKITFG DSDEE

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.