Factsheet for TraesCS7A01G374000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G084210.1	Barley	cytosol	75.39	87.38
Os06t0602400-01	Rice	nucleus, plasma membrane	53.18	77.69
OQU76674	Sorghum	cytosol	60.4	75.31
Zm00001d036897_P001	Maize	extracellular	61.39	70.68
TraesCS5A01G454600.1	Wheat	golgi	46.11	51.26
KRH20283	Soybean	plastid	40.88	49.32
VIT_11s0016g05090.t01	Wine grape	cytosol	42.29	48.78
KRH03709	Soybean	plastid	41.87	48.52
TraesCS4A01G141400.1	Wheat	plastid	43.0	46.34
GSMUA_Achr5P06030_001	Banana	nucleus	41.73	41.03
TraesCS3A01G103700.1	Wheat	cytosol	27.02	38.51
TraesCS3A01G416900.1	Wheat	cytosol	26.45	32.58
TraesCS5A01G114400.1	Wheat	nucleus	24.05	31.78
TraesCS3A01G130200.4	Wheat	cytosol	29.14	31.69
TraesCS1A01G415500.1	Wheat	cytosol	26.17	28.73
TraesCS5A01G153700.1	Wheat	cytosol	22.91	27.79
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	25.18	27.05
TraesCS4A01G270200.1	Wheat	nucleus	26.45	25.72
TraesCS3A01G194200.1	Wheat	nucleus	27.58	24.9
TraesCS4A01G121700.1	Wheat	mitochondrion	26.45	24.38
TraesCS3A01G100200.1	Wheat	cytosol	32.39	17.17
TraesCS7A01G298800.3	Wheat	nucleus	25.32	16.7

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS7A01G374000	EnsemblPlants:TraesCS7A01G374000.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:547082226..547088229

Molecular Weight (calculated)

71318.8 Da

IEP (calculated)

7.945

GRAVY (calculated)

-0.509

Length

707 amino acids

Sequence
(BLAST)

001: MASSDDWGDD AAGGEWTTVT RSGRPSHAGA AGCSPNAKRA APRPPKPAAP TVGEVGEGLA GLDVEGGGGR AGRLDKYDIP VEVSGDGAPA PADGFEQAGL
101: AEAVLRNVAR CGYDHPTPVQ RYSIPIVLSG RDLMACAQTG SGKTAAFCLP VVSGLVAAAA AEGGPGGEGG RGDRDAYDYD YRRTARPLAL VLAPTRELAA
201: QINEEAKKFA HKTGLKVKVA YGGTSIVQQL RDIEKGADIL VATPGRLVDM IERGKISLEA IKYLIMDEAD RMLDMGFEPQ IRKIVDGMGM PRKSVRQTML
301: FSATFPPEIQ RLASDFLSKY IFITVGRVGS STDLITQQVE FVTHDEKRTY LIDLLQKQSF TSSDGKPQQP LTLVFVETKR EADSLRYWLY NKGFPATAIH
401: GDRTQEERES ALRSFKSGLT PVMVATDVVA RGLDVPNVAH VINYDLPKSI EDYVHRIGRT GRAGNAGSAT AFFTESNHPI AKGLLELMTE AKQNVPPWLE
501: DYAGKPFYGG SSFGGRGRRS NGDGGSSSGG RDYRGGSDYS GYSGGGGGGR SYSGVGGDRY SSGSGGDRYS GGGGGGDRYS GGRSYSGGGG GDRYSGGGGG
601: GGDRYSXXXX XXXXXXXXXX XXXXXXGGGR SFSGAGGGGD SYSGGGGDRS YSGGDSYSGG GGKSYSGGGG GGRYSSGGGS SRASDPPPRY YPSHPMGTSN
701: ISASGWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.