Factsheet for VIT_11s0016g05090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
nucleus 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00850.t01	Wine grape	cytosol	41.92	67.28
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	64.11	63.18
VIT_13s0156g00070.t01	Wine grape	cytosol	62.97	62.56
KRH20283	Soybean	plastid	57.26	59.9
KRH03709	Soybean	plastid	58.24	58.52
Os06t0602400-01	Rice	nucleus, plasma membrane	45.51	57.64
OQU76674	Sorghum	cytosol	49.1	53.09
Zm00001d036897_P001	Maize	extracellular	49.59	49.51
HORVU7Hr1G084210.1	Barley	cytosol	47.63	47.87
GSMUA_Achr5P06030_001	Banana	nucleus	54.81	46.73
TraesCS7A01G374000.1	Wheat	nucleus	48.78	42.29
VIT_09s0002g02100.t01	Wine grape	cytosol	30.67	36.5
VIT_06s0004g08160.t01	Wine grape	plastid	30.67	33.1
VIT_09s0002g08120.t01	Wine grape	cytosol	28.22	29.47
VIT_02s0109g00380.t01	Wine grape	cytosol	27.57	26.91
VIT_17s0000g09130.t01	Wine grape	cytosol	25.77	25.86
VIT_07s0005g01600.t01	Wine grape	cytosol	31.97	25.42
VIT_09s0054g01810.t01	Wine grape	cytosol	29.2	25.25
VIT_03s0038g00010.t01	Wine grape	cytosol	28.71	24.72
VIT_14s0066g01020.t01	Wine grape	cytosol	31.97	22.71
VIT_05s0020g00470.t01	Wine grape	cytosol	32.95	17.52
VIT_03s0038g04130.t01	Wine grape	nucleus	30.34	16.22

Protein Annotations

EntrezGene:100245822	wikigene:100245822	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB51575	ProteinID:CCB51575.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HH79	EMBL:FN595756	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100245822	wikigene:LOC100245822	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00021084A4
ArrayExpress:VIT_11s0016g05090	EnsemblPlantsGene:VIT_11s0016g05090	EnsemblPlants:VIT_11s0016g05090.t01	unigene:Vvi.14395	unigene:Vvi.25079	RefSeq:XP_002285108
RefSeq:XP_002285108.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:4374399..4380443

Molecular Weight (calculated)

66932.3 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.381

Length

613 amino acids

Sequence
(BLAST)

001: MSWADVSTDT PTNPTRLARP TRPTYVPPHL RHGAAVATTN GATPIGSDCP PEQGRTATSR GRGQSRGRGR GQGWGQGREA SEANASPFDG SEKFDELEEV
101: EDTNGGLSIN FDAYEDIPVE ASGSDIPPPV SAFAEIHLGE GLNQNIRRCK YVKPTPIQRH AIPIAMAGRD LMACAQTGSG KTAAFCFPII CGILRNQLSR
201: GGARLACPTA LILSPTRELS CQIHEEAKKF SYKTGLKVVV AYGGAPISQQ FRNLERGVDI LVATPGRLVD MIERARVSLR MIKYLALDEA DRMLDMGFEP
301: QIRKIVEQMD MPPPGARQTM LFSATFPNEI QRLAADFLSN YIFLSVGRVG SSTDLIVQRV EFVEDTDKRY HLMDLLQSQM TNRTPKKYAL TLVFVETKRG
401: VDALEQWLCM NGLAATAIHG DKVQMERERA LKSFKSGATP IMVATDVAAR GLDIPHVAHV INFDLPKAID DYVHRIGRTG RAGKSGLATA FFNDGNLSLA
501: KSLVELMQES NQEVPSWLNQ YAERPSYGGG RSRYGGGRFG GHDFRSSSQL KREDYYSPSP YGDVTQTDVF VAPASGEGYY SIPYGEAAPP DSYAAGSDRY
601: GFDHGSIVAS GWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.