Factsheet for VIT_13s0156g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00850.t01	Wine grape	cytosol	49.76	80.37
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	80.23	79.58
Os11t0599500-00	Rice	nucleus, plasma membrane	77.31	76.56
Zm00001d048924_P001	Maize	plasma membrane	73.58	74.67
TraesCS4D01G148700.1	Wheat	golgi	72.61	74.54
TraesCS4B01G126000.1	Wheat	cytosol, plastid	72.61	74.54
HORVU4Hr1G031280.1	Barley	cytosol, plastid	72.45	74.38
KXG28851	Sorghum	cytosol, plastid	73.58	72.64
TraesCS4A01G141400.1	Wheat	plastid	72.45	68.14
VIT_11s0016g05090.t01	Wine grape	cytosol	62.56	62.97
VIT_09s0002g02100.t01	Wine grape	cytosol	30.31	36.31
VIT_06s0004g08160.t01	Wine grape	plastid	31.28	33.98
VIT_09s0002g08120.t01	Wine grape	cytosol	27.39	28.79
VIT_02s0109g00380.t01	Wine grape	cytosol	28.69	28.18
VIT_17s0000g09130.t01	Wine grape	cytosol	27.39	27.66
VIT_09s0054g01810.t01	Wine grape	cytosol	31.28	27.22
VIT_03s0038g00010.t01	Wine grape	cytosol	31.28	27.11
VIT_07s0005g01600.t01	Wine grape	cytosol	31.93	25.55
VIT_14s0066g01020.t01	Wine grape	cytosol	33.06	23.64
VIT_05s0020g00470.t01	Wine grape	cytosol	34.85	18.65
VIT_03s0038g04130.t01	Wine grape	nucleus	31.93	17.18

Protein Annotations

EntrezGene:100240950	wikigene:100240950	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB56677	ProteinID:CCB56677.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HPS1	EMBL:FN596003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100240950	wikigene:LOC100240950	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002108E44
ArrayExpress:VIT_13s0156g00070	EnsemblPlantsGene:VIT_13s0156g00070	EnsemblPlants:VIT_13s0156g00070.t01	RefSeq:XP_002267581	RefSeq:XP_002267581.2	SEG:seg

Description

No Description!

Coordinates

chr13:+:23849812..23858136

Molecular Weight (calculated)

66152.7 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.400

Length

617 amino acids

Sequence
(BLAST)

001: MRTSWADSEE AEAAAVPSTI INNGVVPNSG AAAAAAVSGN SRPARSAYVP PHLRNRPPSS TPPPPAVSAP PAANTRWGGG GGGGGRSGGS FGGAASNTRT
101: GGWDRGRERE VNPFGDDVDV EPPFVQQENS GINFDAYEDI PVDTSGDNVP PAVNSFSEID LGDALNLNIR RCKYVKPTPV QRHAIPISIA GRDLMACAQT
201: GSGKTAAFCF PIISGIMKGQ YAQRPRGSRT AYPLALILSP TRELSCQIHD EAKKFSYQTG VRVVVAYGGA PINQQLRDLE RGVDILVATP GRLVDLLERA
301: RISLQMVQYL ALDEADRMLD MGFEPQIRRI VEQMDMPPRG VRQTMLFSAT FPKEIQRLAS DFLANYIFLA VGRVGSSTDL IVQRVEFVQE SDKRSHLMDL
401: LHAQRENGTH GKQALTLVFV ETKKGADALE HWLCINGFPA TSIHGDRSQQ EREHALRLFK SGATPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR
501: IGRTGRAGKT GLATAFFNEN NSSLARGLAE LMQESNQEVP AWLSRYAARS SYGGGGRNRR SGGGRFGGRD FRRDTSFNRS GGGGDYYGGG RSNSGYGASG
601: SSYGGGGYGA GVTSAWD

Best Arabidopsis Sequence Match ( AT3G58570.1 )
(BLAST)

001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD

Arabidopsis Description

RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.