Factsheet for VIT_08s0007g07070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47978	Canola	plastid	56.59	84.21
VIT_06s0004g00850.t01	Wine grape	cytosol	50.48	82.2
Solyc03g052980.2.1	Tomato	nucleus	78.94	80.23
VIT_13s0156g00070.t01	Wine grape	cytosol	79.58	80.23
PGSC0003DMT400002828	Potato	cytosol	78.78	79.29
CDY06034	Canola	cytosol	73.15	79.13
CDX98304	Canola	cytosol, plastid	58.2	78.52
CDX71948	Canola	cytosol	75.08	78.22
KRH38030	Soybean	endoplasmic reticulum	76.69	78.07
Bra007399.1-P	Field mustard	cytosol	75.88	77.25
Bra016869.1-P	Field mustard	cytosol, plastid	75.56	77.18
CDY14843	Canola	cytosol, plastid	75.56	76.8
AT3G58510.2	Thale cress	cytosol	75.4	76.63
KRH71800	Soybean	plastid	74.92	76.27
CDX98301	Canola	cytosol	73.47	76.04
AT2G42520.2	Thale cress	nucleus, plastid	77.33	75.99
CDX67749	Canola	cytosol	73.47	75.91
Bra003341.1-P	Field mustard	cytosol	74.44	75.9
CDX67752	Canola	cytosol	74.92	73.62
AT3G58570.1	Thale cress	cytosol	75.88	73.06
Bra003343.1-P	Field mustard	cytosol	74.92	72.47
CDY49232	Canola	cytosol	72.67	72.32
CDX71944	Canola	cytosol	72.83	71.45
Bra007402.1-P	Field mustard	cytosol	72.83	70.56
VIT_11s0016g05090.t01	Wine grape	cytosol	63.18	64.11
Bra014568.1-P	Field mustard	cytosol	58.52	54.65
CDX88990	Canola	cytosol, plastid	45.34	50.54
CDY00570	Canola	nucleus	38.1	39.04
VIT_09s0002g02100.t01	Wine grape	cytosol	30.39	36.7
VIT_06s0004g08160.t01	Wine grape	plastid	30.39	33.27
VIT_09s0002g08120.t01	Wine grape	cytosol	27.97	29.64
VIT_02s0109g00380.t01	Wine grape	cytosol	27.65	27.39
VIT_03s0038g00010.t01	Wine grape	cytosol	31.19	27.25
VIT_09s0054g01810.t01	Wine grape	cytosol	31.03	27.22
VIT_17s0000g09130.t01	Wine grape	cytosol	26.37	26.84
VIT_07s0005g01600.t01	Wine grape	cytosol	31.51	25.42
VIT_14s0066g01020.t01	Wine grape	cytosol	32.8	23.64
VIT_05s0020g00470.t01	Wine grape	cytosol	35.69	19.25
VIT_03s0038g04130.t01	Wine grape	nucleus	32.15	17.44

Protein Annotations

EntrezGene:100250337	wikigene:100250337	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB55215	ProteinID:CCB55215.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HLF4	EMBL:FN595991	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100250337	wikigene:LOC100250337	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001983EA7
ArrayExpress:VIT_08s0007g07070	EnsemblPlantsGene:VIT_08s0007g07070	EnsemblPlants:VIT_08s0007g07070.t01	unigene:Vvi.12434	unigene:Vvi.7412	RefSeq:XP_002281113
RefSeq:XP_002281113.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:20688872..20695391

Molecular Weight (calculated)

67021.4 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.476

Length

622 amino acids

Sequence
(BLAST)

001: MRTSWADSVA NSTSDNLVSG SSDNSGFGAG APSRSGRSSY VPPHLRNRPP SSDPPAPSYT SQASAGYGGP PGGTRWGGGS RADFGRSGVT TGVTSGGRVG
101: GSSGWNTRSG GWDRGRDREV NPFGDDDNAE PAFSEQENTG INFDAYEDIP VETSGDNVPP PVNTFAEIDL GEALNQNIRR CKYVKPTPVQ RHAIPISLSG
201: KDLMACAQTG SGKTAAFCFP IISGIMTGQF AQRPRGARTV YPLALILSPT RELSCQIHDE ARKFSYQTGV KVVVAYGGAP INQQLRELER GVDILVATPG
301: RLVDLLERAR VSLQMIRYLA LDEADRMLDM GFEPQIRKIV EQMDMPPPGV RQTMLFSATF PKEIQRLASD FLSSYIFLAV GRVGSSTDLI VQRVEFVHES
401: DKRSHLMDLL HAQRANGAHG KQSLTLVFVE TKKGADSLEH WLCMNGFPAT TIHGDRTQQE REHALRSFKS GNTPILVATD VAARGLDIPH VAHVVNFDLP
501: NDIDDYVHRI GRTGRAGKTG LATAFFNENN SSLARPLADL MQEANQEVPA WLTRYASRAS YGGGKNRRSG GGRFGGRDFR KDTSFNRGGG ATDYYGGNTS
601: SGYGIPGSYG GGYGPGVTSA WD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.