Factsheet for Bra003343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67752	Canola	cytosol	97.82	99.37
CDX98304	Canola	cytosol, plastid	70.92	98.92
Bra007402.1-P	Field mustard	cytosol	91.29	91.43
AT3G58570.1	Thale cress	cytosol	91.76	91.33
Bra016869.1-P	Field mustard	cytosol, plastid	75.58	79.8
Bra003341.1-P	Field mustard	cytosol	74.65	78.69
Bra007399.1-P	Field mustard	cytosol	73.87	77.74
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	72.47	74.92
Solyc03g052980.2.1	Tomato	nucleus	69.05	72.55
KRH38030	Soybean	endoplasmic reticulum	68.43	72.01
KRH71800	Soybean	plastid	68.27	71.85
PGSC0003DMT400002828	Potato	cytosol	68.74	71.52
Os11t0599500-00	Rice	nucleus, plasma membrane	66.87	69.02
TraesCS4D01G148700.1	Wheat	golgi	64.39	68.89
TraesCS4B01G126000.1	Wheat	cytosol, plastid	64.39	68.89
HORVU4Hr1G031280.1	Barley	cytosol, plastid	64.39	68.89
Zm00001d048924_P001	Maize	plasma membrane	64.07	67.76
KXG28851	Sorghum	cytosol, plastid	64.23	66.08
TraesCS4A01G141400.1	Wheat	plastid	64.39	63.11
Bra014568.1-P	Field mustard	cytosol	56.77	54.8
Bra030884.1-P	Field mustard	nucleus	27.68	35.67
Bra035857.1-P	Field mustard	cytosol	32.19	35.03
Bra001004.1-P	Field mustard	cytosol	32.81	33.18
Bra040699.1-P	Field mustard	cytosol	30.95	32.68
Bra023227.1-P	Field mustard	nucleus	27.22	32.23
Bra035518.1-P	Field mustard	nucleus	26.75	32.09
Bra023478.1-P	Field mustard	cytosol	32.97	31.36
Bra008471.1-P	Field mustard	cytosol	25.82	29.48
Bra035177.1-P	Field mustard	cytosol	26.75	29.25
Bra018133.1-P	Field mustard	cytosol	26.75	29.25
Bra003568.1-P	Field mustard	cytosol	26.75	29.1
Bra000447.1-P	Field mustard	cytosol	30.33	28.97
Bra021872.1-P	Field mustard	nucleus	29.24	28.53
Bra004464.1-P	Field mustard	cytosol	31.57	27.73
Bra029779.1-P	Field mustard	nucleus	29.24	21.2
Bra001200.1-P	Field mustard	cytosol	31.88	19.49
Bra025856.1-P	Field mustard	nucleus	31.42	17.25

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra003343	EnsemblPlants:Bra003343.1	EnsemblPlants:Bra003343.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CGL0	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002541698
SEG:seg	:	:	:	:	:

Description

AT3G58570 (E=3e-274) | DEAD box RNA helicase, putative

Coordinates

chrA07:+:12710000..12712825

Molecular Weight (calculated)

68325.1 Da

IEP (calculated)

7.303

GRAVY (calculated)

-0.486

Length

643 amino acids

Sequence
(BLAST)

001: MSSSWADVSE AERAPSGWGY GNSRPSRTNY VPPHLRGRGA SPGSDRGGYG GGGGYGGRGG QGYGGRGGGG GGGGYVGRGG GGGGWNNRSG GWDRRDTETN
101: PFGNDGNVEP VADEQENTGI NFEAYEDIPI ETSGDNVPPP VNTFAEIDLG EALNLNIQRC KYVKPTPVQR NAIPILAAGR DLMACAQTGS GKTAAFCFPI
201: ISGIMKEQQH VERPRGVRGV YPLAVILSPT RELACQIHDE ARKFSYQTGV KVVVAYGGTP VNQQIRELER GVDILVATPG RLNDLLERGR VSLQMVKYLA
301: LDEADRMLDM GFEPQIRKIV QQMDMPPPGV RQTMLFSATF PREIQRLASD FLSNYIFLAV GRVGSSTDLI VQRVEFVHDS DKRSHLMDLL HAQRENGNQG
401: KQALTLVFVE TKKGADSLEN WLCMNGFPAT TIHGDRSQQE REVALRSFKT GRTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI GRTGRAGNSG
501: LATAFFNDNN TSMAKPLAEL MQEANQEVPD WLSRYASRDS FGGGKNRRSG GRFGGRDFRI ESFGQGGGGG GGYYGGGGGG YGAVPGGGYG AMPGGYGNVP
601: GGGYGAVPGG YVPYGRGGGA YYGGGYGTVP NQGYGPGVAS AWD

Best Arabidopsis Sequence Match ( AT3G58570.1 )
(BLAST)

001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD

Arabidopsis Description

RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.