Factsheet for Bra035857.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16735	Canola	cytosol	99.66	99.66
AT5G63120.2	Thale cress	cytosol	92.05	92.05
GSMUA_Achr8P01340_001	Banana	cytosol	51.78	79.9
EES04084	Sorghum	cytosol	67.01	68.51
KRH03228	Soybean	nucleus	69.71	68.44
KRH57127	Soybean	endoplasmic reticulum, nucleus	70.22	67.81
HORVU3Hr1G092600.1	Barley	cytosol	64.64	66.55
HORVU3Hr1G092610.1	Barley	cytosol	64.64	66.55
TraesCS3B01G451900.1	Wheat	cytosol	64.64	66.55
TraesCS3D01G412400.2	Wheat	cytosol	64.64	66.43
TraesCS3A01G416900.1	Wheat	cytosol	64.47	66.38
Bra030884.1-P	Field mustard	nucleus	55.67	65.93
Solyc03g112350.2.1	Tomato	nucleus	72.42	65.75
Zm00001d042416_P002	Maize	extracellular, plasma membrane	66.5	61.6
PGSC0003DMT400046821	Potato	cytosol	70.9	58.36
VIT_17s0000g09130.t01	Wine grape	cytosol	58.54	56.63
Bra040699.1-P	Field mustard	cytosol	40.27	39.08
Bra001004.1-P	Field mustard	cytosol	41.12	38.21
Bra035518.1-P	Field mustard	nucleus	33.33	36.75
Bra023227.1-P	Field mustard	nucleus	33.16	36.1
Bra023478.1-P	Field mustard	cytosol	40.61	35.5
Bra003341.1-P	Field mustard	cytosol	34.86	33.77
Bra007399.1-P	Field mustard	cytosol	34.86	33.72
Bra016869.1-P	Field mustard	cytosol, plastid	34.69	33.66
Bra007402.1-P	Field mustard	cytosol	35.53	32.71
Bra003343.1-P	Field mustard	cytosol	35.03	32.19
Bra000447.1-P	Field mustard	cytosol	36.55	32.1
Bra035177.1-P	Field mustard	cytosol	30.96	31.12
Bra018133.1-P	Field mustard	cytosol	30.96	31.12
Bra008471.1-P	Field mustard	cytosol	29.27	30.73
Bra003568.1-P	Field mustard	cytosol	30.29	30.29
Bra004464.1-P	Field mustard	cytosol	37.39	30.19
Bra014568.1-P	Field mustard	cytosol	30.63	27.18
Bra021872.1-P	Field mustard	nucleus	29.78	26.71
Bra001200.1-P	Field mustard	cytosol	42.47	23.86
Bra029779.1-P	Field mustard	nucleus	34.86	23.22
Bra025856.1-P	Field mustard	nucleus	37.39	18.87

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra035857	EnsemblPlants:Bra035857.1	EnsemblPlants:Bra035857.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4F457	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002542113	SEG:seg	:	:	:	:

Description

AT5G63120 (E=2e-278) | ethylene-responsive DEAD box RNA helicase, putative (RH30)

Coordinates

chrA09:-:3281371..3284748

Molecular Weight (calculated)

64316.9 Da

IEP (calculated)

10.171

GRAVY (calculated)

-0.461

Length

591 amino acids

Sequence
(BLAST)

001: MSSHDRRFAD PNSYRQRSPA PVRSSQPMDP SAAPYNPRYS GGVGGGGGYR PAPVMSGDGS GYGHYPSFHP PSNGFSVGRG GGRGGYGGYG GVRGGYGGGG
101: GRGGSGRREL DSVSLPKQSF GNLVHFEKNF YVESPVVQAM TEEDVALYRT EKDISVEGRD VPKPIKMFQD ANFPDNILDA IAKLGFTEPT PIQAQGWPMA
201: LKGRDLIGIA ETGSGKTLAY LLPALVHVSA QPRLGQDDGP IVLILAPTRE LAVQIQEESR KFGLRSGVRS TCVYGGAPKG RQIHDLRRGV EIVIATPGRL
301: IDMLECQHTN LKRVTYLVLD EADRMLDMGF EPQIRKIVSQ IRPDRQTLLW SATWPREVET LARQFLRDPY KAIIGSADLK ANQSINQVIE IVQTPEKYSR
401: LLTLLKQLMD GSKILIFVET KRGCDQVTRQ LRMDGWPALA IHGDKNQTER DRVLSEFKSG RSPIMTATDV AARGLDVKDI KCVVNYDFPT SLEDYIHRIG
501: RTGRAGAKGM AMTFFTHDNA KFARELIKIL QEAGQVVPPT LSALVRSSGS GGGGGGGGRS FRSRGGGRGG FGDKRPRSTS NFVPHGGKRT W

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.